Class: EMDatasetGeneral

erDiagram Acquisition { integer beamtiltgroups integer calibrated_magnification string cryogen datetime date_time integer frames_per_movie string gainref_flip_rotate integer grids_imaged string holder string holder_cryogen integer images_generated string microscope_software integer nominal_magnification string technique } Author { string country string email string family_name string given_name string name_org string orcid string role OrganizationTypeEnum type_org boolean job_title string telephone } BoundingBox2D { } Detector { string name string mode } EMDatasetGeneral { } EnergyFilter { string model boolean used } Funder { string country string funder_name OrganizationTypeEnum type_org } Grant { string country datetime end_date string grant_name string project_id datetime start_date } Grid { string film_material boolean film_support string film_thickness string film_topology string manufacturer string material float mesh string pretreatment_atmosphere string pretreatment_type } ImageSize { integer height integer width } Instrument { string electron_source string illumination string imaging string operating_mode } Ligand { boolean present string reference string smiles } Microscope { string manufacturer string model } Molecule { string expression_system string gene_name string molecular_class string molecular_type string name_mol string natural_source string sequence string taxonomy_id_expression string taxonomy_id_source } Organizational { } OverallMolecule { AssemblyEnum assembly MoleculeClassEnum molecular_overall_type string name_sample string source } QuantitySI { string unitSI float valueSI string unit float value } Range { } Sample { string name string description } SpecialistOptics { } Specimen { string buffer boolean embedding float ph boolean shadowing boolean staining boolean vitrification string vitrification_cryogen } Acquisition ||--|o BoundingBox2D : "beamshift, beamtilt, imageshift" Acquisition ||--|o EnergyFilter : "energy_filter" Acquisition ||--|o ImageSize : "image_size" Acquisition ||--|o QuantitySI : "dose_per_movie, exposure_time, screen_current" Acquisition ||--|o Range : "calibrated_defocus, nominal_defocus, temperature_range" Acquisition ||--|o SpecialistOptics : "specialist_optics" Acquisition ||--|| ImageSize : "binning_camera" Acquisition ||--|| QuantitySI : "pixel_size" Acquisition ||--}| Detector : "detectors" BoundingBox2D ||--|o QuantitySI : "x_max, x_min, y_max, y_min" Detector ||--|o QuantitySI : "dispersion" Detector ||--|o Range : "collection_angle" EMDatasetGeneral ||--|o Organizational : "organizational" EMDatasetGeneral ||--|o Sample : "sample" EMDatasetGeneral ||--|| Acquisition : "acquisition" EMDatasetGeneral ||--|| Instrument : "instrument" EnergyFilter ||--|| QuantitySI : "width_energy_filter" Grant ||--|o QuantityValue : "budget" Grid ||--|o QuantitySI : "pretreatment_pressure, pretreatment_time" Instrument ||--|o QuantitySI : "beam_convergence, c2_aperture, cs" Instrument ||--|| Microscope : "microscope" Instrument ||--|| QuantitySI : "acceleration_voltage" Organizational ||--}o Funder : "funder" Organizational ||--}o Grant : "grants" Organizational ||--}| Author : "authors" OverallMolecule ||--|o QuantitySI : "molecular_weight" Range ||--|o QuantitySI : "maximal, minimal" Sample ||--|o Grid : "grid" Sample ||--|o OverallMolecule : "overall_molecule" Sample ||--|o Specimen : "specimen" Sample ||--}o Ligand : "ligands" Sample ||--}o Molecule : "molecule" SpecialistOptics ||--|o ChromaticAberrationCorrector : "chromatic_aberration_corrector" SpecialistOptics ||--|o Phaseplate : "phaseplate" SpecialistOptics ||--|o SphericalAberrationCorrector : "spherical_aberration_corrector" Specimen ||--|o QuantitySI : "concentration, humidity, temperature"

name: EMDatasetGeneral
description: General dataset for TEM/STEM and EELS/EDX spectroscopy.
from_schema: https://w3id.org/oscem-schemas/latest/general
is_a: EMDatasetBase
slot_usage:
  acquisition:
    name: acquisition
    description: Describe the data acquisition parameters
    range: Acquisition
    required: true
  instrument:
    name: instrument
    description: Describe the instrument used to acquire the data
    range: Instrument
    required: true
  sample:
    name: sample
    description: Sample information
    range: Sample
    required: false
  organizational:
    name: organizational
    description: Information on authors and grants
    range: Organizational
    required: false
tree_root: true

name: EMDatasetGeneral
description: General dataset for TEM/STEM and EELS/EDX spectroscopy.
from_schema: https://w3id.org/oscem-schemas/latest/general
is_a: EMDatasetBase
slot_usage:
  acquisition:
    name: acquisition
    description: Describe the data acquisition parameters
    range: Acquisition
    required: true
  instrument:
    name: instrument
    description: Describe the instrument used to acquire the data
    range: Instrument
    required: true
  sample:
    name: sample
    description: Sample information
    range: Sample
    required: false
  organizational:
    name: organizational
    description: Information on authors and grants
    range: Organizational
    required: false
attributes:
  acquisition:
    name: acquisition
    description: Describe the data acquisition parameters
    from_schema: https://w3id.org/oscem-schemas/latest/general
    rank: 1000
    owner: EMDatasetGeneral
    domain_of:
    - EMDatasetBase
    range: Acquisition
    required: true
  instrument:
    name: instrument
    description: Describe the instrument used to acquire the data
    from_schema: https://w3id.org/oscem-schemas/latest/general
    rank: 1000
    owner: EMDatasetGeneral
    domain_of:
    - EMDatasetBase
    range: Instrument
    required: true
  sample:
    name: sample
    description: Sample information
    from_schema: https://w3id.org/oscem-schemas/latest/general
    rank: 1000
    owner: EMDatasetGeneral
    domain_of:
    - EMDatasetBase
    range: Sample
    required: false
  organizational:
    name: organizational
    description: Information on authors and grants
    from_schema: https://w3id.org/oscem-schemas/latest/general
    rank: 1000
    owner: EMDatasetGeneral
    domain_of:
    - EMDatasetBase
    range: Organizational
    required: false
tree_root: true