AcquisitionSpa
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: Datatype
    on datatype: string
    with restrictions:
      pattern: spa
  on property: :technique
subclass of: Restriction
  min cardinality: 1
  on property: :technique
subclass of: Restriction
  max cardinality: 1
  on property: :technique
subclass of: Acquisition
in scheme: acquisition

description
type: ObjectProperty
type: SlotDefinition
range: String
definition: The description of the item
in scheme: custom types

descriptors
type: ObjectProperty
type: SlotDefinition
range: Descriptors
definition: List of custom descriptors for user-defined key-value pairs describing how movies were obtained or any related information
in scheme: custom types

person
type: ObjectProperty
type: SlotDefinition
range: Person
definition: person
in scheme: organizational

EMDatasetCell
type: Class
type: ClassDefinition
subclass of: Restriction
  min cardinality: 0
  on property: :organizational
subclass of: Restriction
  all values from: Instrument
  on property: :instrument
subclass of: Restriction
  min cardinality: 1
  on property: :acquisition
subclass of: Restriction
  min cardinality: 0
  on property: :sample
subclass of: Restriction
  max cardinality: 1
  on property: :instrument
subclass of: Restriction
  all values from: AcquisitionCelTomo
  on property: :acquisition
subclass of: Restriction
  all values from: SampleCell
  on property: :sample
subclass of: Restriction
  max cardinality: 1
  on property: :organizational
subclass of: Restriction
  all values from: Organizational
  on property: :organizational
subclass of: Restriction
  min cardinality: 1
  on property: :instrument
subclass of: Restriction
  max cardinality: 1
  on property: :sample
subclass of: Restriction
  max cardinality: 1
  on property: :acquisition
subclass of: EMDatasetBase
definition: cryo electron tomography dataset of a cellular sample, lab grown
in scheme: oscem-schemas-cellular-tomo

AcquisitionEnvTomo
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: Datatype
    on datatype: string
    with restrictions:
      pattern: env_tomo
  on property: :technique
subclass of: Restriction
  max cardinality: 1
  on property: :technique
subclass of: Restriction
  min cardinality: 1
  on property: :technique
subclass of: AcquisitionTomo
in scheme: tomography

AcquisitionSubTomo
type: Class
type: ClassDefinition
subclass of: Restriction
  max cardinality: 1
  on property: :technique
subclass of: Restriction
  all values from: Datatype
    on datatype: string
    with restrictions:
      pattern: subtomo
  on property: :technique
subclass of: Restriction
  min cardinality: 1
  on property: :technique
subclass of: AcquisitionTomo
in scheme: tomography

EMDatasetBase
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: Any
  on property: instrument
subclass of: Restriction
  min cardinality: 0
  on property: acquisition
subclass of: Restriction
  min cardinality: 0
  on property: instrument
subclass of: Restriction
  max cardinality: 1
  on property: instrument
subclass of: Restriction
  max cardinality: 1
  on property: acquisition
subclass of: Restriction
  all values from: Any
  on property: organizational
subclass of: Restriction
  all values from: Any
  on property: acquisition
subclass of: Restriction
  max cardinality: 1
  on property: sample
subclass of: Restriction
  max cardinality: 1
  on property: organizational
subclass of: Restriction
  all values from: Any
  on property: sample
subclass of: Restriction
  min cardinality: 0
  on property: sample
subclass of: Restriction
  min cardinality: 0
  on property: organizational
definition: OSC-EM Metadata for a dataset
in scheme: oscem-emdataset

SampleCell
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: GrowthCondition
  on property: growth_condition
subclass of: Restriction
  min cardinality: 0
  on property: growth_condition
subclass of: Restriction
  max cardinality: 1
  on property: growth_condition
subclass of: SampleEnv
definition: Unifying class to describe the full sample with growth conditions
in scheme: sample-cellular-tomo-lab

Descriptor
type: Class
type: ClassDefinition
subclass of: Restriction
  max cardinality: 1
  on property: descriptor_thing
subclass of: Restriction
  min cardinality: 0
  on property: descriptor_thing
subclass of: Restriction
  all values from: String
  on property: descriptor_name
subclass of: Restriction
  all values from: Any
  on property: descriptor_thing
subclass of: Restriction
  max cardinality: 1
  on property: descriptor_name
subclass of: Restriction
  min cardinality: 1
  on property: descriptor_name
definition: List of custom descriptors for user-defined key-value pairs describing how micrographs were obtained or any related information
in scheme: custom types

Descriptors
type: Class
type: ClassDefinition
subclass of: Descriptor
in scheme: custom types

Series
type: Class
type: ClassDefinition
subclass of: Restriction
  max cardinality: 1
  on property: increment
subclass of: Restriction
  min cardinality: 0
  on property: increment
subclass of: Restriction
  all values from: QuantitySI
  on property: increment
subclass of: Range
definition: A series of numbers constructed from min, max, and increment
in scheme: custom types

SampleEnv
type: Class
type: ClassDefinition
subclass of: Restriction
  max cardinality: 1
  on property: tomogram_features
subclass of: Restriction
  max cardinality: 1
  on property: freezing
subclass of: Restriction
  min cardinality: 0
  on property: tomogram_features
subclass of: Restriction
  max cardinality: 1
  on property: thinning
subclass of: Restriction
  all values from: Thinning
  on property: thinning
subclass of: Restriction
  min cardinality: 0
  on property: freezing
subclass of: Restriction
  min cardinality: 1
  on property: specimen_env
subclass of: Restriction
  all values from: TomogramFeatures
  on property: tomogram_features
subclass of: Restriction
  min cardinality: 0
  on property: thinning
subclass of: Restriction
  max cardinality: 1
  on property: specimen_env
subclass of: Restriction
  all values from: Freezing
  on property: freezing
subclass of: Restriction
  all values from: SpecimenEnv
  on property: specimen_env
definition: Unifying class to describe the full sample.
in scheme: sample-env

Instrument
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: String
  on property: imaging
subclass of: Restriction
  max cardinality: 1
  on property: electron_source
subclass of: Restriction
  min cardinality: 0
  on property: beam_convergence
subclass of: Restriction
  min cardinality: 1
  on property: microscope
subclass of: Restriction
  all values from: Microscope
  on property: microscope
subclass of: Restriction
  max cardinality: 1
  on property: imaging
subclass of: Restriction
  all values from: QuantitySI
  on property: cs
subclass of: Restriction
  max cardinality: 1
  on property: operating_mode
subclass of: Restriction
  all values from: String
  on property: illumination
subclass of: Restriction
  all values from: String
  on property: operating_mode
subclass of: Restriction
  min cardinality: 0
  on property: operating_mode
subclass of: Restriction
  min cardinality: 1
  on property: illumination
subclass of: Restriction
  max cardinality: 1
  on property: microscope
subclass of: Restriction
  min cardinality: 0
  on property: c2_aperture
subclass of: Restriction
  all values from: String
  on property: electron_source
subclass of: Restriction
  max cardinality: 1
  on property: illumination
subclass of: Restriction
  min cardinality: 1
  on property: electron_source
subclass of: Restriction
  min cardinality: 1
  on property: imaging
subclass of: Restriction
  all values from: QuantitySI
  on property: beam_convergence
subclass of: Restriction
  max cardinality: 1
  on property: beam_convergence
subclass of: Restriction
  min cardinality: 0
  on property: cs
subclass of: Restriction
  all values from: QuantitySI
  on property: c2_aperture
subclass of: Restriction
  all values from: QuantitySI
  on property: acceleration_voltage
subclass of: Restriction
  max cardinality: 1
  on property: acceleration_voltage
subclass of: Restriction
  max cardinality: 1
  on property: c2_aperture
subclass of: Restriction
  min cardinality: 1
  on property: acceleration_voltage
subclass of: Restriction
  max cardinality: 1
  on property: cs
definition: Instrument values, mostly constant across a data collection.
in scheme: instrument

Organizational
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: Author
  on property: authors
subclass of: Restriction
  min cardinality: 1
  on property: authors
subclass of: Restriction
  min cardinality: 0
  on property: funder
subclass of: Restriction
  all values from: Grant
  on property: grants
subclass of: Restriction
  all values from: Funder
  on property: funder
subclass of: Restriction
  min cardinality: 0
  on property: grants
definition: Overarching category for authors and grants
in scheme: organizational

oscem-schemas-cellular-tomo
type: Ontology
license: CC-BY
definition: Schema for the Open Standards Community for Electron Microscopy (OSC-EM)

AcquisitionCelTomo
type: Class
type: ClassDefinition
subclass of: Restriction
  max cardinality: 1
  on property: :technique
subclass of: Restriction
  min cardinality: 1
  on property: :technique
subclass of: Restriction
  all values from: Datatype
    on datatype: string
    with restrictions:
      pattern: cellular_tomo
  on property: :technique
subclass of: AcquisitionTomo
in scheme: tomography

Acquisition
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: EnergyFilter
  on property: energy_filter
subclass of: Restriction
  min cardinality: 0
  on property: dose_per_movie
subclass of: Restriction
  all values from: Detector
  on property: detectors
subclass of: Restriction
  min cardinality: 0
  on property: calibrated_magnification
subclass of: Restriction
  min cardinality: 0
  on property: holder
subclass of: Restriction
  max cardinality: 1
  on property: frames_per_movie
subclass of: Restriction
  all values from: String
  on property: cryogen
subclass of: Restriction
  max cardinality: 1
  on property: binning_camera
subclass of: Restriction
  all values from: ImageSize
  on property: image_size
subclass of: Restriction
  min cardinality: 0
  on property: beamshift
subclass of: Restriction
  all values from: Datetime
  on property: date_time
subclass of: Restriction
  all values from: String
  on property: gainref_flip_rotate
subclass of: Restriction
  all values from: QuantitySI
  on property: screen_current
subclass of: Restriction
  max cardinality: 1
  on property: beamtilt
subclass of: Restriction
  min cardinality: 1
  on property: pixel_size
subclass of: Restriction
  min cardinality: 0
  on property: imageshift
subclass of: Restriction
  min cardinality: 1
  on property: binning_camera
subclass of: Restriction
  max cardinality: 1
  on property: image_size
subclass of: Restriction
  min cardinality: 0
  on property: technique
subclass of: Restriction
  max cardinality: 1
  on property: specialist_optics
subclass of: Restriction
  min cardinality: 0
  on property: specialist_optics
subclass of: Restriction
  all values from: Integer
  on property: images_generated
subclass of: Restriction
  min cardinality: 0
  on property: grids_imaged
subclass of: Restriction
  all values from: Integer
  on property: nominal_magnification
subclass of: Restriction
  all values from: Range
  on property: calibrated_defocus
subclass of: Restriction
  min cardinality: 0
  on property: images_generated
subclass of: Restriction
  max cardinality: 1
  on property: date_time
subclass of: Restriction
  min cardinality: 0
  on property: cryogen
subclass of: Restriction
  all values from: SpecialistOptics
  on property: specialist_optics
subclass of: Restriction
  min cardinality: 1
  on property: detectors
subclass of: Restriction
  all values from: String
  on property: holder_cryogen
subclass of: Restriction
  max cardinality: 1
  on property: exposure_time
subclass of: Restriction
  min cardinality: 0
  on property: beamtiltgroups
subclass of: Restriction
  max cardinality: 1
  on property: grids_imaged
subclass of: Restriction
  min cardinality: 1
  on property: date_time
subclass of: Restriction
  all values from: Integer
  on property: frames_per_movie
subclass of: Restriction
  max cardinality: 1
  on property: cryogen
subclass of: Restriction
  max cardinality: 1
  on property: pixel_size
subclass of: Restriction
  all values from: Integer
  on property: calibrated_magnification
subclass of: Restriction
  max cardinality: 1
  on property: holder_cryogen
subclass of: Restriction
  min cardinality: 0
  on property: calibrated_defocus
subclass of: Restriction
  all values from: QuantitySI
  on property: pixel_size
subclass of: Restriction
  min cardinality: 0
  on property: beamtilt
subclass of: Restriction
  all values from: ImageSize
  on property: binning_camera
subclass of: Restriction
  all values from: String
  on property: holder
subclass of: Restriction
  all values from: String
  on property: technique
subclass of: Restriction
  max cardinality: 1
  on property: images_generated
subclass of: Restriction
  max cardinality: 1
  on property: imageshift
subclass of: Restriction
  min cardinality: 0
  on property: holder_cryogen
subclass of: Restriction
  all values from: QuantitySI
  on property: dose_per_movie
subclass of: Restriction
  max cardinality: 1
  on property: calibrated_magnification
subclass of: Restriction
  max cardinality: 1
  on property: beamtiltgroups
subclass of: Restriction
  all values from: BoundingBox2D
  on property: imageshift
subclass of: Restriction
  max cardinality: 1
  on property: calibrated_defocus
subclass of: Restriction
  max cardinality: 1
  on property: beamshift
subclass of: Restriction
  max cardinality: 1
  on property: gainref_flip_rotate
subclass of: Restriction
  all values from: Integer
  on property: beamtiltgroups
subclass of: Restriction
  max cardinality: 1
  on property: holder
subclass of: Restriction
  all values from: BoundingBox2D
  on property: beamshift
subclass of: Restriction
  all values from: QuantitySI
  on property: exposure_time
subclass of: Restriction
  max cardinality: 1
  on property: screen_current
subclass of: Restriction
  all values from: BoundingBox2D
  on property: beamtilt
subclass of: Restriction
  min cardinality: 0
  on property: frames_per_movie
subclass of: Restriction
  min cardinality: 0
  on property: energy_filter
subclass of: Restriction
  max cardinality: 1
  on property: microscope_software
subclass of: Restriction
  min cardinality: 0
  on property: nominal_defocus
definition: General acquisition covering materials science and other use cases. For specialized techniques, use the appropriate subclass (AcquisitionSpa for single particle, or tomography subclasses).
in scheme: acquisition

ChromaticAberrationCorrector
type: Class
type: ClassDefinition
subclass of: Restriction
  max cardinality: 1
  on property: instrument_type
subclass of: Restriction
  min cardinality: 1
  on property: used
subclass of: Restriction
  all values from: Boolean
  on property: used
subclass of: Restriction
  min cardinality: 1
  on property: instrument_type
subclass of: Restriction
  max cardinality: 1
  on property: used
subclass of: Restriction
  all values from: String
  on property: instrument_type
definition: Special device used to correct instrument inherent chromatic aberration.
in scheme: acquisition

Detector
type: Class
type: ClassDefinition
subclass of: Restriction
  min cardinality: 0
  on property: name
subclass of: Restriction
  min cardinality: 0
  on property: mode
subclass of: Restriction
  min cardinality: 0
  on property: dispersion
subclass of: Restriction
  all values from: Range
  on property: collection_angle
subclass of: Restriction
  all values from: QuantitySI
  on property: dispersion
subclass of: Restriction
  max cardinality: 1
  on property: collection_angle
subclass of: Restriction
  max cardinality: 1
  on property: name
subclass of: Restriction
  all values from: String
  on property: name
subclass of: Restriction
  max cardinality: 1
  on property: mode
subclass of: Restriction
  max cardinality: 1
  on property: dispersion
subclass of: Restriction
  min cardinality: 0
  on property: collection_angle
subclass of: Restriction
  all values from: String
  on property: mode
definition: Class representing a detector
in scheme: acquisition

EnergyFilter
type: Class
type: ClassDefinition
subclass of: Restriction
  max cardinality: 1
  on property: model
subclass of: Restriction
  all values from: String
  on property: model
subclass of: Restriction
  min cardinality: 1
  on property: width_energy_filter
subclass of: Restriction
  all values from: Boolean
  on property: used
subclass of: Restriction
  max cardinality: 1
  on property: width_energy_filter
subclass of: Restriction
  max cardinality: 1
  on property: used
subclass of: Restriction
  min cardinality: 1
  on property: used
subclass of: Restriction
  all values from: QuantitySI
  on property: width_energy_filter
subclass of: Restriction
  min cardinality: 0
  on property: model
definition: A device used to filter for electrons with specific energy.
in scheme: acquisition

Phaseplate
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: String
  on property: instrument_type
subclass of: Restriction
  max cardinality: 1
  on property: used
subclass of: Restriction
  all values from: Boolean
  on property: used
subclass of: Restriction
  max cardinality: 1
  on property: instrument_type
subclass of: Restriction
  min cardinality: 1
  on property: used
subclass of: Restriction
  min cardinality: 1
  on property: instrument_type
definition: Used to modulate the phase of the electron wave.
in scheme: acquisition

SpecialistOptics
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: ChromaticAberrationCorrector
  on property: chromatic_aberration_corrector
subclass of: Restriction
  max cardinality: 1
  on property: spherical_aberration_corrector
subclass of: Restriction
  max cardinality: 1
  on property: chromatic_aberration_corrector
subclass of: Restriction
  min cardinality: 0
  on property: phaseplate
subclass of: Restriction
  all values from: Phaseplate
  on property: phaseplate
subclass of: Restriction
  all values from: SphericalAberrationCorrector
  on property: spherical_aberration_corrector
subclass of: Restriction
  min cardinality: 0
  on property: chromatic_aberration_corrector
subclass of: Restriction
  min cardinality: 0
  on property: spherical_aberration_corrector
subclass of: Restriction
  max cardinality: 1
  on property: phaseplate
definition: Optional optics used to correct for instrument limitations.
in scheme: acquisition

SphericalAberrationCorrector
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: String
  on property: instrument_type
subclass of: Restriction
  max cardinality: 1
  on property: instrument_type
subclass of: Restriction
  min cardinality: 1
  on property: used
subclass of: Restriction
  all values from: Boolean
  on property: used
subclass of: Restriction
  min cardinality: 1
  on property: instrument_type
subclass of: Restriction
  max cardinality: 1
  on property: used
definition: Special device used to correct instrument inherent spherical aberration.
in scheme: acquisition

detectors
type: ObjectProperty
type: SlotDefinition
range: Detector
in scheme: acquisition

GrowthCondition
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: String
  on property: treatment
subclass of: Restriction
  min cardinality: 0
  on property: media
subclass of: Restriction
  min cardinality: 0
  on property: treatment
subclass of: Restriction
  max cardinality: 1
  on property: treatment
subclass of: Restriction
  max cardinality: 1
  on property: temperature_growth
subclass of: Restriction
  min cardinality: 0
  on property: growth_location
subclass of: Restriction
  all values from: String
  on property: cell_cycle
subclass of: Restriction
  max cardinality: 1
  on property: growth_location
subclass of: Restriction
  min cardinality: 0
  on property: temperature_growth
subclass of: Restriction
  all values from: String
  on property: media
subclass of: Restriction
  min cardinality: 0
  on property: cell_cycle
subclass of: Restriction
  max cardinality: 1
  on property: media
subclass of: Restriction
  all values from: String
  on property: growth_location
subclass of: Restriction
  max cardinality: 1
  on property: atmosphere_growth
subclass of: Restriction
  min cardinality: 0
  on property: atmosphere_growth
subclass of: Restriction
  all values from: String
  on property: atmosphere_growth
subclass of: Restriction
  max cardinality: 1
  on property: cell_cycle
subclass of: Restriction
  all values from: QuantitySI
  on property: temperature_growth
definition: how the cells were grown
in scheme: sample-cellular-tomo-lab

Freezing
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: QuantitySI
  on property: humidity_env
subclass of: Restriction
  min cardinality: 0
  on property: atmosphere
subclass of: Restriction
  all values from: String
  on property: details
subclass of: Restriction
  min cardinality: 0
  on property: temperature_env
subclass of: Restriction
  max cardinality: 1
  on property: temperature_env
subclass of: Restriction
  max cardinality: 1
  on property: blotting
subclass of: Restriction
  all values from: String
  on property: atmosphere
subclass of: Restriction
  min cardinality: 0
  on property: humidity_env
subclass of: Restriction
  min cardinality: 0
  on property: method
subclass of: Restriction
  min cardinality: 0
  on property: blotting
subclass of: Restriction
  max cardinality: 1
  on property: details
subclass of: Restriction
  max cardinality: 1
  on property: cryogen_sample_env
subclass of: Restriction
  all values from: :FreezingMethodEnum
  on property: method
subclass of: Restriction
  max cardinality: 1
  on property: humidity_env
subclass of: Restriction
  all values from: String
  on property: cryogen_sample_env
subclass of: Restriction
  all values from: QuantitySI
  on property: temperature_env
subclass of: Restriction
  all values from: Boolean
  on property: blotting
subclass of: Restriction
  min cardinality: 0
  on property: cryogen_sample_env
subclass of: Restriction
  max cardinality: 1
  on property: atmosphere
subclass of: Restriction
  min cardinality: 0
  on property: details
subclass of: Restriction
  max cardinality: 1
  on property: method
definition: how the sample was frozen.
in scheme: sample-env

SpecimenEnv
type: Class
type: ClassDefinition
subclass of: Restriction
  max cardinality: 1
  on property: location
subclass of: Restriction
  all values from: Date
  on property: collection_date
subclass of: Restriction
  max cardinality: 1
  on property: source_env
subclass of: Restriction
  max cardinality: 1
  on property: tissue
subclass of: Restriction
  all values from: String
  on property: organism
subclass of: Restriction
  all values from: String
  on property: tissue
subclass of: Restriction
  max cardinality: 1
  on property: collection_date
subclass of: Restriction
  min cardinality: 0
  on property: collection_date
subclass of: Restriction
  max cardinality: 1
  on property: handling
subclass of: Restriction
  min cardinality: 0
  on property: source_env
subclass of: Restriction
  min cardinality: 0
  on property: handling
subclass of: Restriction
  all values from: String
  on property: handling
subclass of: Restriction
  all values from: String
  on property: source_env
subclass of: Restriction
  all values from: String
  on property: location
subclass of: Restriction
  min cardinality: 1
  on property: organism
subclass of: Restriction
  min cardinality: 0
  on property: tissue
subclass of: Restriction
  min cardinality: 0
  on property: location
definition: base information on the acquisition and treatment of the sample itself.
in scheme: sample-env

Thinning
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: Boolean
  on property: lift_out
subclass of: Restriction
  all values from: String
  on property: ion_source
subclass of: Restriction
  all values from: String
  on property: method_thin
subclass of: Restriction
  max cardinality: 1
  on property: ion_source
subclass of: Restriction
  all values from: String
  on property: instrument_thin
subclass of: Restriction
  min cardinality: 0
  on property: method_thin
subclass of: Restriction
  max cardinality: 1
  on property: method_thin
subclass of: Restriction
  all values from: QuantitySI
  on property: target_thickness
subclass of: Restriction
  max cardinality: 1
  on property: instrument_thin
subclass of: Restriction
  min cardinality: 0
  on property: instrument_thin
subclass of: Restriction
  max cardinality: 1
  on property: lift_out
subclass of: Restriction
  min cardinality: 0
  on property: target_thickness
subclass of: Restriction
  min cardinality: 0
  on property: ion_source
subclass of: Restriction
  min cardinality: 0
  on property: lift_out
subclass of: Restriction
  max cardinality: 1
  on property: target_thickness
definition: how the frozen sample was thinned by i.e. FiB-milling
in scheme: sample-env

TomogramFeatures
type: Class
type: ClassDefinition
subclass of: Restriction
  max cardinality: 1
  on property: main_target
subclass of: Restriction
  min cardinality: 0
  on property: main_target
subclass of: Restriction
  max cardinality: 1
  on property: details_tomo
subclass of: Restriction
  all values from: String
  on property: details_tomo
subclass of: Restriction
  all values from: String
  on property: main_target
subclass of: Restriction
  max cardinality: 1
  on property: cellular_features
subclass of: Restriction
  min cardinality: 0
  on property: organelles
subclass of: Restriction
  all values from: String
  on property: cellular_features
subclass of: Restriction
  all values from: String
  on property: organelles
subclass of: Restriction
  min cardinality: 0
  on property: details_tomo
subclass of: Restriction
  min cardinality: 0
  on property: cellular_features
definition: what was the target of the tomograms, and what area of a cell do they cover.
in scheme: sample-env

organelles
type: ObjectProperty
type: SlotDefinition
range: String
definition: What organelles; if any; are present?
in scheme: sample-env

organism
type: ObjectProperty
type: SlotDefinition
range: String
definition: the organism(s) present in your sample, if not perfectly defined try to asses as close as possible.
in scheme: sample-env

Microscope
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: String
  on property: manufacturer
subclass of: Restriction
  max cardinality: 1
  on property: manufacturer
subclass of: Restriction
  all values from: String
  on property: model
subclass of: Restriction
  min cardinality: 0
  on property: manufacturer
subclass of: Restriction
  min cardinality: 1
  on property: model
subclass of: Restriction
  max cardinality: 1
  on property: model
definition: Microscope information
in scheme: instrument

Author
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: Thing
  on property: :given name
subclass of: Restriction
  all values from: String
  on property: country
subclass of: Restriction
  min cardinality: 1
  on property: :family name
subclass of: Restriction
  max cardinality: 1
  on property: role
subclass of: Restriction
  min cardinality: 0
  on property: country
subclass of: Restriction
  all values from: String
  on property: orcid
subclass of: Restriction
  max cardinality: 1
  on property: country
subclass of: Restriction
  min cardinality: 0
  on property: orcid
subclass of: Restriction
  all values from: :OrganizationTypeEnum
  on property: type_org
subclass of: Restriction
  max cardinality: 1
  on property: :given name
subclass of: Restriction
  min cardinality: 1
  on property: :given name
subclass of: Restriction
  max cardinality: 1
  on property: orcid
subclass of: Restriction
  min cardinality: 0
  on property: name_org
subclass of: Restriction
  max cardinality: 1
  on property: :family name
subclass of: Restriction
  max cardinality: 1
  on property: :email
subclass of: Restriction
  min cardinality: 1
  on property: :email
subclass of: Restriction
  all values from: Thing
  on property: :family name
subclass of: Restriction
  all values from: String
  on property: role
subclass of: Restriction
  max cardinality: 1
  on property: name_org
subclass of: Restriction
  all values from: String
  on property: name_org
subclass of: Restriction
  min cardinality: 0
  on property: role
subclass of: Restriction
  min cardinality: 1
  on property: type_org
subclass of: Restriction
  all values from: Thing
  on property: :email
subclass of: Restriction
  max cardinality: 1
  on property: type_org
subclass of: Person
definition: Details on the person performing the experiment.
in scheme: organizational

Funder
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: String
  on property: funder_name
subclass of: Restriction
  max cardinality: 1
  on property: funder_name
subclass of: Restriction
  min cardinality: 0
  on property: country
subclass of: Restriction
  max cardinality: 1
  on property: country
subclass of: Restriction
  all values from: String
  on property: country
subclass of: Restriction
  min cardinality: 0
  on property: funder_name
subclass of: Restriction
  max cardinality: 1
  on property: type_org
subclass of: Restriction
  min cardinality: 0
  on property: type_org
subclass of: Restriction
  all values from: :OrganizationTypeEnum
  on property: type_org
definition: Description of the project funding
in scheme: organizational

Grant
type: Class
type: ClassDefinition
subclass of: Restriction
  max cardinality: 1
  on property: budget
subclass of: Restriction
  max cardinality: 1
  on property: grant_name
subclass of: Restriction
  min cardinality: 0
  on property: grant_name
subclass of: Restriction
  min cardinality: 0
  on property: country
subclass of: Restriction
  all values from: String
  on property: country
subclass of: Restriction
  all values from: Datetime
  on property: start_date
subclass of: Restriction
  max cardinality: 1
  on property: country
subclass of: Restriction
  all values from: Datetime
  on property: end_date
subclass of: Restriction
  min cardinality: 0
  on property: end_date
subclass of: Restriction
  max cardinality: 1
  on property: start_date
subclass of: Restriction
  all values from: String
  on property: grant_name
subclass of: Restriction
  min cardinality: 0
  on property: start_date
subclass of: Restriction
  all values from: String
  on property: project_id
subclass of: Restriction
  max cardinality: 1
  on property: end_date
subclass of: Restriction
  min cardinality: 0
  on property: budget
subclass of: Restriction
  max cardinality: 1
  on property: project_id
subclass of: Restriction
  min cardinality: 0
  on property: project_id
subclass of: Restriction
  all values from: QuantityValue
  on property: budget
definition: Grant
in scheme: organizational

Person
type: Class
type: ClassDefinition
subclass of: Restriction
  min cardinality: 0
  on property: family_name
subclass of: Restriction
  max cardinality: 1
  on property: telephone
subclass of: Restriction
  max cardinality: 1
  on property: family_name
subclass of: Restriction
  all values from: String
  on property: family_name
subclass of: Restriction
  max cardinality: 1
  on property: given_name
subclass of: Restriction
  min cardinality: 0
  on property: job_title
subclass of: Restriction
  all values from: Datatype
    intersection of: String
    intersection of: Datatype
      on datatype: string
      with restrictions:
        pattern: ^[a-zA-Z0-9_.+-]+@[a-zA-Z0-9-]+\.[a-zA-Z0-9-.]+$
  on property: email
subclass of: Restriction
  min cardinality: 0
  on property: given_name
subclass of: Restriction
  all values from: String
  on property: telephone
subclass of: Restriction
  min cardinality: 0
  on property: email
subclass of: Restriction
  max cardinality: 1
  on property: job_title
subclass of: Restriction
  all values from: String
  on property: given_name
subclass of: Restriction
  min cardinality: 0
  on property: telephone
subclass of: Restriction
  all values from: Boolean
  on property: job_title
subclass of: Restriction
  max cardinality: 1
  on property: email
definition: personal information
in scheme: organizational

authors
type: ObjectProperty
type: SlotDefinition
range: Author
definition: List of authors associated with the project
in scheme: organizational

funder
type: ObjectProperty
type: SlotDefinition
range: Funder
definition: funding organization/person.
in scheme: organizational

grants
type: ObjectProperty
type: SlotDefinition
range: Grant
definition: List of grants associated with the project
in scheme: organizational

cellular_tomo
type: Class
type: :AcquisitionTechnique
subclass of: :AcquisitionTechnique

env_tomo
type: Class
type: :AcquisitionTechnique
subclass of: :AcquisitionTechnique

spa
type: Class
type: :AcquisitionTechnique
subclass of: :AcquisitionTechnique

subtomo
type: Class
type: :AcquisitionTechnique
subclass of: :AcquisitionTechnique

high_pressure_freezing
type: Class
type: :FreezingMethodEnum
subclass of: :FreezingMethodEnum

plunge_freezing
type: Class
type: :FreezingMethodEnum
subclass of: :FreezingMethodEnum

Academic
type: Class
type: :OrganizationTypeEnum
subclass of: :OrganizationTypeEnum

Commercial
type: Class
type: :OrganizationTypeEnum
subclass of: :OrganizationTypeEnum

Government
type: Class
type: :OrganizationTypeEnum
subclass of: :OrganizationTypeEnum

Other
type: Class
type: :OrganizationTypeEnum
subclass of: :OrganizationTypeEnum

TiltAngle
type: Class
type: ClassDefinition
subclass of: Restriction
  min cardinality: 1
  on property: :minimal
subclass of: Restriction
  max cardinality: 1
  on property: :minimal
subclass of: Restriction
  max cardinality: 1
  on property: :increment
subclass of: Restriction
  all values from: Thing
  on property: :increment
subclass of: Restriction
  max cardinality: 1
  on property: :maximal
subclass of: Restriction
  min cardinality: 1
  on property: :maximal
subclass of: Restriction
  all values from: Thing
  on property: :maximal
subclass of: Restriction
  min cardinality: 1
  on property: :increment
subclass of: Restriction
  all values from: Thing
  on property: :minimal
subclass of: Series
definition: The min, max and increment of the tilt angle in a tomography session. Unit is degree.
in scheme: tomography

acquisition
type: ObjectProperty
type: SlotDefinition
range: Any
in scheme: oscem-emdataset

instrument
type: ObjectProperty
type: SlotDefinition
range: Any
in scheme: oscem-emdataset

organizational
type: ObjectProperty
type: SlotDefinition
range: Any
in scheme: oscem-emdataset

sample
type: ObjectProperty
type: SlotDefinition
range: Any
in scheme: oscem-emdataset

beamshift
type: ObjectProperty
type: SlotDefinition
range: BoundingBox2D
definition: Movement of the beam above the sample for data collection purposes that does not require movement of the stage. Given in mrad.
in scheme: acquisition

beamtilt
type: ObjectProperty
type: SlotDefinition
range: BoundingBox2D
definition: Another way to move the beam above the sample for data collection purposes that does not require movement of the stage. Given in mrad.
in scheme: acquisition

beamtiltgroups
type: ObjectProperty
type: SlotDefinition
range: Integer
definition: Number of Beamtilt groups present in this dataset - for optimized processing split dataset into groups of same tilt angle. Despite its name Beamshift is often used to achive this result.
in scheme: acquisition

binning_camera
type: ObjectProperty
type: SlotDefinition
range: ImageSize
definition: Level of binning on the images applied during data collection
in scheme: acquisition

calibrated_defocus
type: ObjectProperty
type: SlotDefinition
range: Range
definition: Machine estimated defocus, min and max values in µm. Has a tendency to be off.
in scheme: acquisition

calibrated_magnification
type: ObjectProperty
type: SlotDefinition
range: Integer
definition: Calculated magnification, no unit
in scheme: acquisition

chromatic_aberration_corrector
type: ObjectProperty
type: SlotDefinition
range: ChromaticAberrationCorrector
definition: Specialist device to correct for chromatic aberration of the microscope lenses
in scheme: acquisition

collection_angle
type: ObjectProperty
type: SlotDefinition
range: Range
definition: Collection angle set, min and max values in mrad.
in scheme: acquisition

cryogen
type: ObjectProperty
type: SlotDefinition
range: String
definition: Cryogen used in cooling the instrument and sample, usually nitrogen
in scheme: acquisition

date_time
type: ObjectProperty
type: SlotDefinition
range: Datetime
definition: Time and date of the data acquisition
in scheme: acquisition

dispersion
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: Dispersion of an analytical detector, in eV
in scheme: acquisition

dose_per_movie
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: Average dose per image/movie/tilt - given in electrons per square Angstrom
in scheme: acquisition

energy_filter
type: ObjectProperty
type: SlotDefinition
range: EnergyFilter
definition: Whether an energy filter was used and its specifics.
in scheme: acquisition

exposure_time
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: Time of data acquisition per movie/tilt - in s
in scheme: acquisition

frames_per_movie
type: ObjectProperty
type: SlotDefinition
range: Integer
definition: Number of frames that on average constitute a full movie, can be a bit hard to define for some detectors
in scheme: acquisition

gainref_flip_rotate
type: ObjectProperty
type: SlotDefinition
range: String
definition: Whether and how you have to flip or rotate the gainref in order to align with your acquired images
in scheme: acquisition

grids_imaged
type: ObjectProperty
type: SlotDefinition
range: Integer
definition: Number of grids imaged for this project - here with qualifier during this data acquisition
in scheme: acquisition

holder
type: ObjectProperty
type: SlotDefinition
range: String
definition: Speciman holder model
in scheme: acquisition

holder_cryogen
type: ObjectProperty
type: SlotDefinition
range: String
definition: Type of cryogen used in the holder - if the holder is cooled seperately
in scheme: acquisition

image_size
type: ObjectProperty
type: SlotDefinition
range: ImageSize
definition: The size of the image in pixels, height and width given.
in scheme: acquisition

images_generated
type: ObjectProperty
type: SlotDefinition
range: Integer
definition: Number of images generated total for this data collection - might need a qualifier for tilt series to determine whether full series or individual tilts are counted
in scheme: acquisition

imageshift
type: ObjectProperty
type: SlotDefinition
range: BoundingBox2D
definition: Movement of the Beam below the image in order to shift the image on the detector. Given in µm.
in scheme: acquisition

microscope_software
type: ObjectProperty
type: SlotDefinition
range: String
definition: Software used for instrument control,
in scheme: acquisition

mode
type: ObjectProperty
type: SlotDefinition
range: String
definition: Mode of the detector, e.g. "counting", "ScanningDetector", "ImagingDetector", etc.
in scheme: acquisition

nominal_defocus
type: ObjectProperty
type: SlotDefinition
range: Range
definition: Target defocus set, min and max values in nm.
in scheme: acquisition

nominal_magnification
type: ObjectProperty
type: SlotDefinition
range: Integer
definition: Magnification level as indicated by the instrument, no unit
in scheme: acquisition

phaseplate
type: ObjectProperty
type: SlotDefinition
range: Phaseplate
definition: Phaseplate is a special optics device that can be used to enhance contrast
in scheme: acquisition

pixel_size
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: Pixel size, in Angstrom
in scheme: acquisition

screen_current
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: The total electron beam current hitting the viewing screen, in nA.
in scheme: acquisition

specialist_optics
type: ObjectProperty
type: SlotDefinition
range: SpecialistOptics
definition: Any type of special optics, such as a phaseplate
in scheme: acquisition

spherical_aberration_corrector
type: ObjectProperty
type: SlotDefinition
range: SphericalAberrationCorrector
definition: Specialist device to correct for spherical aberration of the microscope lenses
in scheme: acquisition

technique
type: ObjectProperty
type: SlotDefinition
range: String
definition: Specifies which Acquisition subschema/class is in use.
in scheme: acquisition

temperature_range
type: ObjectProperty
type: SlotDefinition
range: Range
definition: Temperature during data collection, in K with min and max values.
in scheme: acquisition
preferred label: temperature

width_energy_filter
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: Width of the energy filter used.
in scheme: acquisition

atmosphere_growth
type: ObjectProperty
type: SlotDefinition
range: String
definition: What was the atmosphere the sample was in, elaborate on any special gases present etc.
in scheme: sample-cellular-tomo-lab

cell_cycle
type: ObjectProperty
type: SlotDefinition
range: String
definition: What was the targeted cell cycle state, if any
in scheme: sample-cellular-tomo-lab

growth_condition
type: ObjectProperty
type: SlotDefinition
range: GrowthCondition
definition: how the specimen was grown
in scheme: sample-cellular-tomo-lab

growth_location
type: ObjectProperty
type: SlotDefinition
range: String
definition: In/on what kind of surface/container the cells were grown; i.e. directly on a grid
in scheme: sample-cellular-tomo-lab

media
type: ObjectProperty
type: SlotDefinition
range: String
definition: What growth media was used
in scheme: sample-cellular-tomo-lab

temperature_growth
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: temperature of the sample; in K.
in scheme: sample-cellular-tomo-lab

treatment
type: ObjectProperty
type: SlotDefinition
range: String
definition: were there any special treatment conditions; such as addition of certain chemicals etc
in scheme: sample-cellular-tomo-lab

QuantityValue
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: String
  on property: unit
subclass of: Restriction
  min cardinality: 1
  on property: value
subclass of: Restriction
  max cardinality: 1
  on property: value
subclass of: Restriction
  min cardinality: 1
  on property: unit
subclass of: Restriction
  all values from: Float
  on property: value
subclass of: Restriction
  max cardinality: 1
  on property: unit
definition: if a value has a unit, it should be given as a unit value pair.
in scheme: custom types

descriptor_name
type: ObjectProperty
type: SlotDefinition
range: String
definition: Name defining the descriptor
in scheme: custom types

descriptor_thing
type: ObjectProperty
type: SlotDefinition
range: Any
definition: Description of the descriptor
in scheme: custom types

height
type: ObjectProperty
type: SlotDefinition
range: Integer
definition: The height of a given item - unit depends on item
in scheme: custom types

increment
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: Increment between elements of a series
in scheme: custom types

manufacturer
type: ObjectProperty
type: SlotDefinition
range: String
definition: The name of the manufacturer
in scheme: custom types

maximal
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: Maximal value of a given dataset property
in scheme: custom types

minimal
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: Minimal value of a given dataset property
in scheme: custom types

name
type: ObjectProperty
type: SlotDefinition
range: String
definition: The name of the item
in scheme: custom types

unit
type: ObjectProperty
type: SlotDefinition
range: String
definition: the unit of a given value
in scheme: custom types

unitSI
type: ObjectProperty
type: SlotDefinition
range: String
definition: the SI unit attached to a si value
in scheme: custom types

value
type: ObjectProperty
type: SlotDefinition
range: Float
definition: the value of a field with a unit
in scheme: custom types

valueSI
type: ObjectProperty
type: SlotDefinition
range: Float
definition: value of a given field in respect to its SI unit
in scheme: custom types

width
type: ObjectProperty
type: SlotDefinition
range: Integer
definition: The width of a given item - unit depends on item
in scheme: custom types

x_max
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: maximum x
in scheme: custom types

x_min
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: minimum x
in scheme: custom types

y_max
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: maximum y
in scheme: custom types

y_min
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: minimum y
in scheme: custom types

atmosphere
type: ObjectProperty
type: SlotDefinition
range: String
definition: What was the atmosphere the sample was in right before freezing, elaborate on any special gases present etc.
in scheme: sample-env

blotting
type: ObjectProperty
type: SlotDefinition
range: Boolean
definition: whether blotting was performed.
in scheme: sample-env

cellular_features
type: ObjectProperty
type: SlotDefinition
range: String
definition: What type of cellular features are present in your tomograms?
in scheme: sample-env

collection_date
type: ObjectProperty
type: SlotDefinition
range: Date
definition: When the sample was collected
in scheme: sample-env

cryogen_sample_env
type: ObjectProperty
type: SlotDefinition
range: String
definition: the cryogen used to freeze the sample, i.e. ethane
in scheme: sample-env

details
type: ObjectProperty
type: SlotDefinition
range: String
definition: Any further comments on the freezing process go here.
in scheme: sample-env

details_tomo
type: ObjectProperty
type: SlotDefinition
range: String
definition: If you have any further comments on your tomograms please leave them here
in scheme: sample-env

freezing
type: ObjectProperty
type: SlotDefinition
range: Freezing
in scheme: sample-env

handling
type: ObjectProperty
type: SlotDefinition
range: String
definition: What was done to the sample, please give an overview of relevant treatments.
in scheme: sample-env

humidity_env
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: humidity of the atmosphere right before/ during freezing; in %.
in scheme: sample-env

instrument_thin
type: ObjectProperty
type: SlotDefinition
range: String
definition: Instrument used for thinning the sample
in scheme: sample-env

ion_source
type: ObjectProperty
type: SlotDefinition
range: String
definition: what ion source was used?
in scheme: sample-env

lift_out
type: ObjectProperty
type: SlotDefinition
range: Boolean
definition: whether a lift out was performed
in scheme: sample-env

location
type: ObjectProperty
type: SlotDefinition
range: String
definition: the geographical location of your source, optimally in a geographic coordinate system.
in scheme: sample-env

main_target
type: ObjectProperty
type: SlotDefinition
range: String
definition: What was the main biological target of your research for this tomogram?
in scheme: sample-env

method
type: ObjectProperty
type: SlotDefinition
range: :FreezingMethodEnum
definition: freezing method - such as plunge freezing, high pressure freezing etc.
in scheme: sample-env

method_thin
type: ObjectProperty
type: SlotDefinition
range: String
definition: The thinning method used, such as FIB milling.
in scheme: sample-env

source_env
type: ObjectProperty
type: SlotDefinition
range: String
definition: where is this sample from? i.e. Hospital
in scheme: sample-env

specimen_env
type: ObjectProperty
type: SlotDefinition
range: SpecimenEnv
in scheme: sample-env

target_thickness
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: What was the target thickness of the lamella; in nm.
in scheme: sample-env

temperature_env
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: temperature of the sample right before freezing; in K.
in scheme: sample-env

thinning
type: ObjectProperty
type: SlotDefinition
range: Thinning
in scheme: sample-env

tissue
type: ObjectProperty
type: SlotDefinition
range: String
definition: if the sample is a tissue sample please indicate what type of tissue.
in scheme: sample-env

tomogram_features
type: ObjectProperty
type: SlotDefinition
range: TomogramFeatures
in scheme: sample-env

acceleration_voltage
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: Voltage used for the electron acceleration, in kV
in scheme: instrument

beam_convergence
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: Refers to how tightly or widely the electron beam is focused onto the sample, in mrad. Typically low convergence for TEM and high for STEM.
in scheme: instrument

c2_aperture
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: C2 aperture size used in data acquisition, in µm
in scheme: instrument

cs
type: ObjectProperty
type: SlotDefinition
range: QuantitySI
definition: Spherical aberration of the instrument, in mm
in scheme: instrument

electron_source
type: ObjectProperty
type: SlotDefinition
range: String
definition: Type of electron source used in the microscope, such as FEG
in scheme: instrument

illumination
type: ObjectProperty
type: SlotDefinition
range: String
definition: Mode of illumination used during data collection
in scheme: instrument

imaging
type: ObjectProperty
type: SlotDefinition
range: String
definition: Mode of imaging used during data collection
in scheme: instrument

microscope
type: ObjectProperty
type: SlotDefinition
range: Microscope
definition: Microscope information
in scheme: instrument

operating_mode
type: ObjectProperty
type: SlotDefinition
range: String
definition: Operating mode of the microscope, i.e. "TEM", "STEM"
in scheme: instrument

budget
type: ObjectProperty
type: SlotDefinition
range: QuantityValue
definition: budget
in scheme: organizational

email
type: ObjectProperty
type: SlotDefinition
range: Datatype
  intersection of: String
  intersection of: Datatype
    on datatype: string
    with restrictions:
      pattern: ^[a-zA-Z0-9_.+-]+@[a-zA-Z0-9-]+\.[a-zA-Z0-9-.]+$
definition: email
in scheme: organizational

end_date
type: ObjectProperty
type: SlotDefinition
range: Datetime
definition: end date
in scheme: organizational

family_name
type: ObjectProperty
type: SlotDefinition
range: String
definition: last name
in scheme: organizational

funder_name
type: ObjectProperty
type: SlotDefinition
range: String
definition: funding organization/person.
in scheme: organizational

given_name
type: ObjectProperty
type: SlotDefinition
range: String
definition: first name
in scheme: organizational

grant_name
type: ObjectProperty
type: SlotDefinition
range: String
definition: name of the grant
in scheme: organizational

job_title
type: ObjectProperty
type: SlotDefinition
range: Boolean
definition: job title
in scheme: organizational

name_org
type: ObjectProperty
type: SlotDefinition
range: String
definition: Name of the organization
in scheme: organizational

orcid
type: ObjectProperty
type: SlotDefinition
range: String
definition: ORCID of the author, a type of unique identifier
in scheme: organizational

project_id
type: ObjectProperty
type: SlotDefinition
range: String
definition: project id
in scheme: organizational

role
type: ObjectProperty
type: SlotDefinition
range: String
definition: Role of the author, for example principal investigator
in scheme: organizational

start_date
type: ObjectProperty
type: SlotDefinition
range: Datetime
definition: start date
in scheme: organizational

telephone
type: ObjectProperty
type: SlotDefinition
range: String
definition: work phone
in scheme: organizational

AcquisitionTomo
type: Class
type: ClassDefinition
subclass of: Restriction
  min cardinality: 1
  on property: tilt_axis_angle
subclass of: Restriction
  min cardinality: 1
  on property: tilt_angle
subclass of: Restriction
  all values from: TiltAngle
  on property: tilt_angle
subclass of: Restriction
  max cardinality: 1
  on property: tilt_axis_angle
subclass of: Restriction
  all values from: Float
  on property: tilt_axis_angle
subclass of: Restriction
  max cardinality: 1
  on property: tilt_angle
subclass of: Acquisition
in scheme: tomography

tilt_angle
type: ObjectProperty
type: SlotDefinition
range: TiltAngle
definition: The min, max and increment of the tilt angle in a tomography session. Unit is degree.
in scheme: tomography

tilt_axis_angle
type: ObjectProperty
type: SlotDefinition
range: Float
definition: The tilt axis angle of a tomography series
in scheme: tomography

ImageSize
type: Class
type: ClassDefinition
subclass of: Restriction
  all values from: Integer
  on property: width
subclass of: Restriction
  max cardinality: 1
  on property: height
subclass of: Restriction
  max cardinality: 1
  on property: width
subclass of: Restriction
  min cardinality: 0
  on property: width
subclass of: Restriction
  min cardinality: 0
  on property: height
subclass of: Restriction
  all values from: Integer
  on property: height
definition: size of a 2D image (in integer units)
in scheme: custom types

BoundingBox2D
type: Class
type: ClassDefinition
subclass of: Restriction
  max cardinality: 1
  on property: y_max
subclass of: Restriction
  min cardinality: 0
  on property: x_min
subclass of: Restriction
  min cardinality: 0
  on property: y_min
subclass of: Restriction
  all values from: QuantitySI
  on property: x_min
subclass of: Restriction
  min cardinality: 0
  on property: x_max
subclass of: Restriction
  max cardinality: 1
  on property: x_max
subclass of: Restriction
  all values from: QuantitySI
  on property: x_max
subclass of: Restriction
  max cardinality: 1
  on property: y_min
subclass of: Restriction
  all values from: QuantitySI
  on property: y_min
subclass of: Restriction
  all values from: QuantitySI
  on property: y_max
subclass of: Restriction
  min cardinality: 0
  on property: y_max
subclass of: Restriction
  max cardinality: 1
  on property: x_min
definition: an axis-aligned 2D bounding box (float units)
in scheme: custom types

model
type: ObjectProperty
type: SlotDefinition
range: String
definition: The model of the item
in scheme: custom types

type_org
type: ObjectProperty
type: SlotDefinition
range: :OrganizationTypeEnum
definition: Type of organization, academic, commercial, governmental, etc.
in scheme: organizational

instrument_type
type: ObjectProperty
type: SlotDefinition
range: String
definition: Details of a given specialist instrument
in scheme: acquisition

Range
type: Class
type: ClassDefinition
subclass of: Restriction
  min cardinality: 0
  on property: maximal
subclass of: Restriction
  max cardinality: 1
  on property: maximal
subclass of: Restriction
  all values from: QuantitySI
  on property: minimal
subclass of: Restriction
  min cardinality: 0
  on property: minimal
subclass of: Restriction
  all values from: QuantitySI
  on property: maximal
subclass of: Restriction
  max cardinality: 1
  on property: minimal
definition: A range constructed from min and max
in scheme: custom types

country
type: ObjectProperty
type: SlotDefinition
range: String
definition: Country of the institution
in scheme: organizational

Any
type: Class
type: ClassDefinition
definition: Any type, used as the base for type-narrowing.
in scheme: custom types

used
type: ObjectProperty
type: SlotDefinition
range: Boolean
definition: whether a specific instrument was used during data acquisition
in scheme: acquisition

QuantitySI
type: Class
type: ClassDefinition
subclass of: Restriction
  min cardinality: 0
  on property: unitSI
subclass of: Restriction
  min cardinality: 0
  on property: valueSI
subclass of: Restriction
  all values from: Float
  on property: valueSI
subclass of: Restriction
  max cardinality: 1
  on property: unitSI
subclass of: Restriction
  all values from: String
  on property: unitSI
subclass of: Restriction
  max cardinality: 1
  on property: valueSI
subclass of: QuantityValue
definition: unit value extended to have two additional fields si_value and si_unit
in scheme: custom types

Restriction
max cardinality: 1
on property: temperature_range

Restriction
min cardinality: 0
on property: temperature_range

Restriction
max cardinality: 1
on property: dose_per_movie

Restriction
min cardinality: 0
on property: screen_current

Restriction
min cardinality: 0
on property: exposure_time

Restriction
min cardinality: 0
on property: gainref_flip_rotate

Restriction
max cardinality: 1
on property: technique

Restriction
min cardinality: 0
on property: nominal_magnification

Restriction
max cardinality: 1
on property: nominal_magnification

Restriction
min cardinality: 0
on property: microscope_software

Restriction
max cardinality: 1
on property: nominal_defocus

Restriction
min cardinality: 0
on property: image_size

Restriction
max cardinality: 1
on property: energy_filter