LinkML schema for processing electron microscopy metadata, broadly following the EMDB standard with some additions.
In RDF serializations, a slot with range of string is treated as a literal or type xsd:string. If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "string".
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "integer".
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "boolean".
A real number that conforms to the xsd:float specification
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "float".
A real number that conforms to the xsd:double specification
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "double".
A real number with arbitrary precision that conforms to the xsd:decimal specification
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "decimal".
A time object represents a (local) time of day, independent of any particular day
URI is dateTime because OWL reasoners do not work with straight date or time
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "time".
a date (year, month and day) in an idealized calendar
URI is dateTime because OWL reasoners don't work with straight date or time
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "date".
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "datetime".
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "date_or_datetime".
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "uriorcurie".
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "curie".
in RDF serializations this MUST be expanded to a URI
in non-RDF serializations MAY be serialized as the compact representation
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "uri".
in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "ncname".
A URI or CURIE that represents an object in the model.
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "objectidentifier".
A URI, CURIE or BNODE that represents a node in a model.
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "nodeidentifier".
A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form.
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "jsonpointer".
A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form.
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "jsonpath".
A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF.
If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "sparqlpath".
Minimal value of a given dataset property
Maximal value of a given dataset property
The width of a given item - unit depends on item
The height of a given item - unit depends on item
List of custom descriptors for user-defined key-value pairs describing how movies were obtained or any related information
value of a given field in respect to its SI unit
Filename of the astigmatism values histogram
Filename of the defocus values histogram
Filename of micrographs shown as examples in ascending order of defocus value
Filename of the resolution values histogram
Filename of micrographs shown as examples in descending order based on the number of particles
Total number of micrographs from which coordinates come from
Filename of histogram for particle number per micrograph
Filename of the image containing 2D class images
Filename of the front view isosurface image
Filename of the image containing 3D class images
Filename of orthogonal slices in X direction
Filename of orthogonal slices in Y direction
Filename of orthogonal slices in Z direction
Filename of the side view isosurface image
Filename of the top view isosurface image
Number of particles associated to volume
Set of parameters describing the data processing
Any type, used as the base for type-narrowing.
A series of numbers constructed from min, max, and increment
an axis-aligned 2D bounding box (float units)
if a value has a unit, it should be given as a unit value pair.
unit value extended to have two additional fields si_value and si_unit
List of custom descriptors for user-defined key-value pairs describing how micrographs were obtained or any related information
Class representing Contrast Transfer Function (CTF) metadata