SchemaDefinition
name: Processing
description: LinkML schema for processing electron microscopy metadata, broadly following the EMDB standard with some additions.
id: https://w3id.org/oscem-schemas/latest/processing
imports: linkml:types
imports: ./custom_types
imports: ./movies
imports: ./micrographs
imports: ./CTFs
imports: ./coordinates
imports: ./classes2D
imports: ./classes3D
imports: ./volumes
license: https://creativecommons.org/publicdomain/zero/1.0/
prefixes:
  prefix prefix: linkml
  prefix reference: https://w3id.org/linkml/
prefixes:
  prefix prefix: processing
  prefix reference: https://w3id.org/oscem-schemas/latest/processing
default prefix: processing
default range: string
types: TypeDefinition
  name: string
  definition uri: https://w3id.org/linkml/String
  description: A character string
  notes: In RDF serializations, a slot with range of string is treated as a literal or type xsd:string. If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "string".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  exact mappings: schema:Text
  base: str
  uri: http://www.w3.org/2001/XMLSchema#string
types: TypeDefinition
  name: integer
  definition uri: https://w3id.org/linkml/Integer
  description: An integer
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "integer".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  exact mappings: schema:Integer
  base: int
  uri: http://www.w3.org/2001/XMLSchema#integer
types: TypeDefinition
  name: boolean
  definition uri: https://w3id.org/linkml/Boolean
  description: A binary (true or false) value
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "boolean".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  exact mappings: schema:Boolean
  base: Bool
  uri: http://www.w3.org/2001/XMLSchema#boolean
  repr: bool
types: TypeDefinition
  name: float
  definition uri: https://w3id.org/linkml/Float
  description: A real number that conforms to the xsd:float specification
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "float".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  exact mappings: schema:Float
  base: float
  uri: http://www.w3.org/2001/XMLSchema#float
types: TypeDefinition
  name: double
  definition uri: https://w3id.org/linkml/Double
  description: A real number that conforms to the xsd:double specification
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "double".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  close mappings: schema:Float
  base: float
  uri: http://www.w3.org/2001/XMLSchema#double
types: TypeDefinition
  name: decimal
  definition uri: https://w3id.org/linkml/Decimal
  description: A real number with arbitrary precision that conforms to the xsd:decimal specification
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "decimal".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  broad mappings: schema:Number
  base: Decimal
  uri: http://www.w3.org/2001/XMLSchema#decimal
types: TypeDefinition
  name: time
  definition uri: https://w3id.org/linkml/Time
  description: A time object represents a (local) time of day, independent of any particular day
  notes: URI is dateTime because OWL reasoners do not work with straight date or time
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "time".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  exact mappings: schema:Time
  base: XSDTime
  uri: http://www.w3.org/2001/XMLSchema#time
  repr: str
types: TypeDefinition
  name: date
  definition uri: https://w3id.org/linkml/Date
  description: a date (year, month and day) in an idealized calendar
  notes: URI is dateTime because OWL reasoners don't work with straight date or time
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "date".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  exact mappings: schema:Date
  base: XSDDate
  uri: http://www.w3.org/2001/XMLSchema#date
  repr: str
types: TypeDefinition
  name: datetime
  definition uri: https://w3id.org/linkml/Datetime
  description: The combination of a date and time
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "datetime".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  exact mappings: schema:DateTime
  base: XSDDateTime
  uri: http://www.w3.org/2001/XMLSchema#dateTime
  repr: str
types: TypeDefinition
  name: date_or_datetime
  definition uri: https://w3id.org/linkml/DateOrDatetime
  description: Either a date or a datetime
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "date_or_datetime".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  base: str
  uri: https://w3id.org/linkml/DateOrDatetime
  repr: str
types: TypeDefinition
  name: uriorcurie
  definition uri: https://w3id.org/linkml/Uriorcurie
  description: a URI or a CURIE
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "uriorcurie".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  base: URIorCURIE
  uri: http://www.w3.org/2001/XMLSchema#anyURI
  repr: str
types: TypeDefinition
  name: curie
  definition uri: https://w3id.org/linkml/Curie
  conforms to: https://www.w3.org/TR/curie/
  description: a compact URI
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "curie".
  comments: in RDF serializations this MUST be expanded to a URI
  comments: in non-RDF serializations MAY be serialized as the compact representation
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  base: Curie
  uri: http://www.w3.org/2001/XMLSchema#string
  repr: str
types: TypeDefinition
  name: uri
  definition uri: https://w3id.org/linkml/Uri
  conforms to: https://www.ietf.org/rfc/rfc3987.txt
  description: a complete URI
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "uri".
  comments: in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  close mappings: schema:URL
  base: URI
  uri: http://www.w3.org/2001/XMLSchema#anyURI
  repr: str
types: TypeDefinition
  name: ncname
  definition uri: https://w3id.org/linkml/Ncname
  description: Prefix part of CURIE
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "ncname".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  base: NCName
  uri: http://www.w3.org/2001/XMLSchema#string
  repr: str
types: TypeDefinition
  name: objectidentifier
  definition uri: https://w3id.org/linkml/Objectidentifier
  description: A URI or CURIE that represents an object in the model.
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "objectidentifier".
  comments: Used for inheritance and type checking
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  base: ElementIdentifier
  uri: http://www.w3.org/ns/shex#iri
  repr: str
types: TypeDefinition
  name: nodeidentifier
  definition uri: https://w3id.org/linkml/Nodeidentifier
  description: A URI, CURIE or BNODE that represents a node in a model.
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "nodeidentifier".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  base: NodeIdentifier
  uri: http://www.w3.org/ns/shex#nonLiteral
  repr: str
types: TypeDefinition
  name: jsonpointer
  definition uri: https://w3id.org/linkml/Jsonpointer
  conforms to: https://datatracker.ietf.org/doc/html/rfc6901
  description: A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form.
  notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "jsonpointer".
  from schema: https://w3id.org/linkml/types
  imported from: linkml:types
  base: str
  uri: http://www.w3.org/2001/XMLSchema#string
  repr: str
slots: SlotDefinition
classes: ClassDefinition
metamodel version: 1.7.0
source file: processing.yaml
source file date: 2025-12-05T16:03:40
source file size: 1515
generation date: 2025-12-05T16:06:20

TypeDefinition
name: jsonpath
definition uri: https://w3id.org/linkml/Jsonpath
conforms to: https://www.ietf.org/archive/id/draft-goessner-dispatch-jsonpath-00.html
description: A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form.
notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "jsonpath".
from schema: https://w3id.org/linkml/types
imported from: linkml:types
base: str
uri: http://www.w3.org/2001/XMLSchema#string
repr: str

TypeDefinition
name: sparqlpath
definition uri: https://w3id.org/linkml/Sparqlpath
conforms to: https://www.w3.org/TR/sparql11-query/#propertypaths
description: A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF.
notes: If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "sparqlpath".
from schema: https://w3id.org/linkml/types
imported from: linkml:types
base: str
uri: http://www.w3.org/2001/XMLSchema#string
repr: str

SlotDefinition
name: movies
definition uri: https://w3id.org/oscem-schemas/latest/processingmovies
description: Movies metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
slot uri: https://w3id.org/oscem-schemas/latest/processingmovies
owner: Processing
domain of: Processing
range: Movies
inlined: true
inlined as list: true

SlotDefinition
name: micrographs
definition uri: https://w3id.org/oscem-schemas/latest/processingmicrographs
description: Micrographs metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
slot uri: https://w3id.org/oscem-schemas/latest/processingmicrographs
owner: Processing
domain of: Processing
range: Micrographs
inlined: true
inlined as list: true

SlotDefinition
name: ctfs
definition uri: https://w3id.org/oscem-schemas/latest/processingctfs
description: CTFs metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
slot uri: https://w3id.org/oscem-schemas/latest/processingctfs
owner: Processing
domain of: Processing
range: CTFs
inlined: true
inlined as list: true

SlotDefinition
name: coordinates
definition uri: https://w3id.org/oscem-schemas/latest/processingcoordinates
description: Coordinates metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
slot uri: https://w3id.org/oscem-schemas/latest/processingcoordinates
owner: Processing
domain of: Processing
range: Coordinates
inlined: true
inlined as list: true

SlotDefinition
name: classes2D
definition uri: https://w3id.org/oscem-schemas/latest/processingclasses2D
description: Classes 2D metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
slot uri: https://w3id.org/oscem-schemas/latest/processingclasses2D
owner: Processing
domain of: Processing
range: Classes2D
inlined: true
inlined as list: true

SlotDefinition
name: classes3D
definition uri: https://w3id.org/oscem-schemas/latest/processingclasses3D
description: Classes 3D metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
slot uri: https://w3id.org/oscem-schemas/latest/processingclasses3D
owner: Processing
domain of: Processing
range: Classes3D
inlined: true
inlined as list: true

SlotDefinition
name: volumes
definition uri: https://w3id.org/oscem-schemas/latest/processingvolumes
description: Volume metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
slot uri: https://w3id.org/oscem-schemas/latest/processingvolumes
owner: Processing
domain of: Processing
range: Volumes
multivalued: true
inlined: true
inlined as list: true

SlotDefinition
name: name
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesname
description: The name of the item
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesname
range: string

SlotDefinition
name: description
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescription
description: The description of the item
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescription
range: string

SlotDefinition
name: manufacturer
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesmanufacturer
description: The name of the manufacturer
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesmanufacturer
range: string

SlotDefinition
name: model
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesmodel
description: The model of the item
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesmodel
range: string

SlotDefinition
name: minimal
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesminimal
description: Minimal value of a given dataset property
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesminimal
owner: Range
domain of: Range
range: QuantitySI
inlined: true
inlined as list: true

SlotDefinition
name: maximal
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesmaximal
description: Maximal value of a given dataset property
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesmaximal
owner: Range
domain of: Range
range: QuantitySI
inlined: true
inlined as list: true

SlotDefinition
name: increment
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesincrement
description: Increment between elements of a series
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesincrement
owner: Series
domain of: Series
range: QuantitySI
inlined: true
inlined as list: true

SlotDefinition
name: width
definition uri: https://w3id.org/oscem-schemas/latest/custom_typeswidth
description: The width of a given item - unit depends on item
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typeswidth
owner: ImageSize
domain of: ImageSize
range: integer

SlotDefinition
name: height
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesheight
description: The height of a given item - unit depends on item
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesheight
owner: ImageSize
domain of: ImageSize
range: integer

SlotDefinition
name: x_min
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesx_min
description: minimum x
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesx_min
owner: BoundingBox2D
domain of: BoundingBox2D
range: QuantitySI
inlined: true
inlined as list: true

SlotDefinition
name: x_max
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesx_max
description: maximum x
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesx_max
owner: BoundingBox2D
domain of: BoundingBox2D
range: QuantitySI
inlined: true
inlined as list: true

SlotDefinition
name: y_min
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesy_min
description: minimum y
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesy_min
owner: BoundingBox2D
domain of: BoundingBox2D
range: QuantitySI
inlined: true
inlined as list: true

SlotDefinition
name: y_max
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesy_max
description: maximum y
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesy_max
owner: BoundingBox2D
domain of: BoundingBox2D
range: QuantitySI
inlined: true
inlined as list: true

SlotDefinition
name: unit
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesunit
description: the unit of a given value
from schema: https://w3id.org/oscem-schemas/latest/custom_types
mappings: http://example.org/UNKNOWN/qudt/hasUnit
slot uri: http://example.org/UNKNOWN/qudt/hasUnit
owner: QuantityValue
domain of: QuantityValue
range: string

SlotDefinition
name: value
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesvalue
description: the value of a field with a unit
from schema: https://w3id.org/oscem-schemas/latest/custom_types
mappings: http://example.org/UNKNOWN/qudt/hasQuantityKind
slot uri: http://example.org/UNKNOWN/qudt/hasQuantityKind
owner: QuantityValue
domain of: QuantityValue
range: float

SlotDefinition
name: descriptors
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
description: List of custom descriptors for user-defined key-value pairs describing how movies were obtained or any related information
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
owner: Volumes
domain of: Movies
domain of: Micrographs
domain of: CTFs
domain of: Coordinates
domain of: Classes2D
domain of: Classes3D
domain of: Volumes
range: Descriptors
multivalued: true
inlined: true
inlined as list: true

SlotDefinition
name: descriptor_name
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptor_name
description: Name defining the descriptor
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptor_name
owner: Descriptor
domain of: Descriptor
range: string

SlotDefinition
name: descriptor_thing
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptor_thing
description: Description of the descriptor
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptor_thing
owner: Descriptor
domain of: Descriptor
range: Any
inlined: true
inlined as list: true

SlotDefinition
name: valueSI
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesvalueSI
description: value of a given field in respect to its SI unit
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesvalueSI
owner: QuantitySI
domain of: QuantitySI
range: float

SlotDefinition
name: unitSI
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesunitSI
description: the SI unit attached to a si value
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesunitSI
owner: QuantitySI
domain of: QuantitySI
range: string

SlotDefinition
name: dark_image
definition uri: https://w3id.org/oscem-schemas/latest/moviesdark_image
description: Dark image filename
from schema: https://w3id.org/oscem-schemas/latest/movies
slot uri: https://w3id.org/oscem-schemas/latest/moviesdark_image
owner: Movies
domain of: Movies
range: string

SlotDefinition
name: dose_per_image
definition uri: https://w3id.org/oscem-schemas/latest/moviesdose_per_image
description: Dose per image
from schema: https://w3id.org/oscem-schemas/latest/movies
slot uri: https://w3id.org/oscem-schemas/latest/moviesdose_per_image
owner: Movies
domain of: Movies
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: gain_image
definition uri: https://w3id.org/oscem-schemas/latest/moviesgain_image
description: Gain image filename
from schema: https://w3id.org/oscem-schemas/latest/movies
slot uri: https://w3id.org/oscem-schemas/latest/moviesgain_image
owner: Movies
domain of: Movies
range: string

SlotDefinition
name: initial_dose
definition uri: https://w3id.org/oscem-schemas/latest/moviesinitial_dose
description: Initial dose
from schema: https://w3id.org/oscem-schemas/latest/movies
slot uri: https://w3id.org/oscem-schemas/latest/moviesinitial_dose
owner: Movies
domain of: Movies
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: number_micrographs
definition uri: https://w3id.org/oscem-schemas/latest/micrographsnumber_micrographs
description: Number of micrographs
from schema: https://w3id.org/oscem-schemas/latest/micrographs
slot uri: https://w3id.org/oscem-schemas/latest/micrographsnumber_micrographs
owner: Micrographs
domain of: Micrographs
range: float

SlotDefinition
name: astigmatism
definition uri: https://w3id.org/oscem-schemas/latest/ctfsastigmatism
description: Astigmatism metadata
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsastigmatism
owner: CTFs
domain of: CTFs
range: Astigmatism
inlined: true
inlined as list: true

SlotDefinition
name: amplitude_contrast
definition uri: https://w3id.org/oscem-schemas/latest/ctfsamplitude_contrast
description: Amplitude contrast
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsamplitude_contrast
owner: CTFs
domain of: CTFs
range: float

SlotDefinition
name: astigmatism_histogram
definition uri: https://w3id.org/oscem-schemas/latest/ctfsastigmatism_histogram
description: Filename of the astigmatism values histogram
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsastigmatism_histogram
owner: Astigmatism
domain of: Astigmatism
range: string

SlotDefinition
name: defocus
definition uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus
description: Defocus metadata
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus
owner: CTFs
domain of: CTFs
range: Defocus
inlined: true
inlined as list: true

SlotDefinition
name: defocus_histogram
definition uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus_histogram
description: Filename of the defocus values histogram
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus_histogram
owner: Defocus
domain of: Defocus
range: string

SlotDefinition
name: defocus_micrograph_examples
definition uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus_micrograph_examples
description: Filename of micrographs shown as examples in ascending order of defocus value
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus_micrograph_examples
owner: Defocus
domain of: Defocus
range: string

SlotDefinition
name: output_avg_defocus
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_avg_defocus
description: Average value of defocus
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_avg_defocus
owner: Defocus
domain of: Defocus
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: output_avg_resolution
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_avg_resolution
description: Average value of resolution
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_avg_resolution
owner: Resolution
domain of: Resolution
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: output_max_defocus
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_max_defocus
description: Maximum defocus
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_max_defocus
owner: Defocus
domain of: Defocus
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: output_max_resolution
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_max_resolution
description: Maximum resolution
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_max_resolution
owner: Resolution
domain of: Resolution
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: output_min_defocus
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_min_defocus
description: Minimum defocus
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_min_defocus
owner: Defocus
domain of: Defocus
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: output_min_resolution
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_min_resolution
description: Minimum resolution
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_min_resolution
owner: Resolution
domain of: Resolution
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: resolution
definition uri: https://w3id.org/oscem-schemas/latest/ctfsresolution
description: Resolution metadata
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsresolution
owner: CTFs
domain of: CTFs
range: Resolution
inlined: true
inlined as list: true

SlotDefinition
name: resolution_histogram
definition uri: https://w3id.org/oscem-schemas/latest/ctfsresolution_histogram
description: Filename of the resolution values histogram
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsresolution_histogram
owner: Resolution
domain of: Resolution
range: string

SlotDefinition
name: micrograph_examples
definition uri: https://w3id.org/oscem-schemas/latest/coordinatesmicrograph_examples
description: Filename of micrographs shown as examples in descending order based on the number of particles
from schema: https://w3id.org/oscem-schemas/latest/coordinates
slot uri: https://w3id.org/oscem-schemas/latest/coordinatesmicrograph_examples
owner: Coordinates
domain of: Coordinates
range: string

SlotDefinition
name: num_source_micrographs
definition uri: https://w3id.org/oscem-schemas/latest/coordinatesnum_source_micrographs
description: Total number of micrographs from which coordinates come from
from schema: https://w3id.org/oscem-schemas/latest/coordinates
slot uri: https://w3id.org/oscem-schemas/latest/coordinatesnum_source_micrographs
owner: Coordinates
domain of: Coordinates
range: integer

SlotDefinition
name: number_particles
definition uri: https://w3id.org/oscem-schemas/latest/coordinatesnumber_particles
description: Total number of particles
from schema: https://w3id.org/oscem-schemas/latest/coordinates
slot uri: https://w3id.org/oscem-schemas/latest/coordinatesnumber_particles
owner: Coordinates
domain of: Coordinates
range: integer

SlotDefinition
name: particles_histogram
definition uri: https://w3id.org/oscem-schemas/latest/coordinatesparticles_histogram
description: Filename of histogram for particle number per micrograph
from schema: https://w3id.org/oscem-schemas/latest/coordinates
slot uri: https://w3id.org/oscem-schemas/latest/coordinatesparticles_histogram
owner: Coordinates
domain of: Coordinates
range: string

SlotDefinition
name: particles_per_micrograph
definition uri: https://w3id.org/oscem-schemas/latest/coordinatesparticles_per_micrograph
description: Mean number of particles per micrograph
from schema: https://w3id.org/oscem-schemas/latest/coordinates
slot uri: https://w3id.org/oscem-schemas/latest/coordinatesparticles_per_micrograph
owner: Coordinates
domain of: Coordinates
range: float

SlotDefinition
name: images_classes_2D
definition uri: https://w3id.org/oscem-schemas/latest/classes2Dimages_classes_2D
description: Filename of the image containing 2D class images
from schema: https://w3id.org/oscem-schemas/latest/classes2D
slot uri: https://w3id.org/oscem-schemas/latest/classes2Dimages_classes_2D
owner: Classes2D
domain of: Classes2D
range: string

SlotDefinition
name: particles_per_2Dclass
definition uri: https://w3id.org/oscem-schemas/latest/classes2Dparticles_per_2Dclass
description: Number of particles per 2D class
from schema: https://w3id.org/oscem-schemas/latest/classes2D
slot uri: https://w3id.org/oscem-schemas/latest/classes2Dparticles_per_2Dclass
owner: Classes2D
domain of: Classes2D
range: integer
multivalued: true

SlotDefinition
name: resolution_classes_2D
definition uri: https://w3id.org/oscem-schemas/latest/classes2Dresolution_classes_2D
description: Resolution of classes 2D
from schema: https://w3id.org/oscem-schemas/latest/classes2D
slot uri: https://w3id.org/oscem-schemas/latest/classes2Dresolution_classes_2D
owner: Classes2D
domain of: Classes2D
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: front_view
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dfront_view
description: Filename of the front view isosurface image
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dfront_view
owner: IsosurfaceImages
domain of: IsosurfaceImages
range: string

SlotDefinition
name: isosurface_images
definition uri: https://w3id.org/oscem-schemas/latest/classes3Disosurface_images
description: isosurface images of volume
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Disosurface_images
owner: Volumes
domain of: Volume
domain of: Volumes
range: IsosurfaceImages
inlined: true
inlined as list: true

SlotDefinition
name: images_classes_3D
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dimages_classes_3D
description: Filename of the image containing 3D class images
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dimages_classes_3D
owner: Classes3D
domain of: Classes3D
range: string

SlotDefinition
name: orthogonal_slices
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices
description: orthogonal slices of volume
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices
owner: Volumes
domain of: Volume
domain of: Volumes
range: OrthogonalSlices
inlined: true
inlined as list: true

SlotDefinition
name: orthogonal_slices_X
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_X
description: Filename of orthogonal slices in X direction
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_X
owner: OrthogonalSlices
domain of: OrthogonalSlices
range: string

SlotDefinition
name: orthogonal_slices_Y
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_Y
description: Filename of orthogonal slices in Y direction
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_Y
owner: OrthogonalSlices
domain of: OrthogonalSlices
range: string

SlotDefinition
name: orthogonal_slices_Z
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_Z
description: Filename of orthogonal slices in Z direction
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_Z
owner: OrthogonalSlices
domain of: OrthogonalSlices
range: string

SlotDefinition
name: particles_per_3Dclass
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dparticles_per_3Dclass
description: Number of particles per 3D class
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dparticles_per_3Dclass
owner: Classes3D
domain of: Classes3D
range: integer
multivalued: true

SlotDefinition
name: resolution_classes_3D
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dresolution_classes_3D
description: Resolution of volume
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dresolution_classes_3D
owner: Classes3D
domain of: Classes3D
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: side_view
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dside_view
description: Filename of the side view isosurface image
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dside_view
owner: IsosurfaceImages
domain of: IsosurfaceImages
range: string

SlotDefinition
name: top_view
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dtop_view
description: Filename of the top view isosurface image
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dtop_view
owner: IsosurfaceImages
domain of: IsosurfaceImages
range: string

SlotDefinition
name: volume
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dvolume
description: Describes volume(s) obtained
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dvolume
owner: Classes3D
domain of: Classes3D
range: Volume
multivalued: true
inlined: true
inlined as list: true

SlotDefinition
name: vol_number_particles
definition uri: https://w3id.org/oscem-schemas/latest/volumesvol_number_particles
description: Number of particles associated to volume
from schema: https://w3id.org/oscem-schemas/latest/volumes
slot uri: https://w3id.org/oscem-schemas/latest/volumesvol_number_particles
owner: Volumes
domain of: Volumes
range: integer

SlotDefinition
name: vol_resolution
definition uri: https://w3id.org/oscem-schemas/latest/volumesvol_resolution
description: Resolution of volume
from schema: https://w3id.org/oscem-schemas/latest/volumes
slot uri: https://w3id.org/oscem-schemas/latest/volumesvol_resolution
owner: Volumes
domain of: Volumes
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: size
definition uri: https://w3id.org/oscem-schemas/latest/volumessize
description: Size of the volume
from schema: https://w3id.org/oscem-schemas/latest/volumes
slot uri: https://w3id.org/oscem-schemas/latest/volumessize
owner: Volumes
domain of: Volumes
range: integer
multivalued: true

SlotDefinition
name: volume_type
definition uri: https://w3id.org/oscem-schemas/latest/volumesvolume_type
description: Indicates the type of volume
from schema: https://w3id.org/oscem-schemas/latest/volumes
slot uri: https://w3id.org/oscem-schemas/latest/volumesvolume_type
owner: Volumes
domain of: Volumes
range: string

SlotDefinition
name: Processing_movies
definition uri: https://w3id.org/oscem-schemas/latest/processingmovies
description: Movies metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
is a: movies
domain: Processing
slot uri: https://w3id.org/oscem-schemas/latest/processingmovies
alias: movies
owner: Processing
domain of: Processing
is usage slot: true
usage slot name: movies
range: Movies
inlined: true
inlined as list: true

SlotDefinition
name: Processing_micrographs
definition uri: https://w3id.org/oscem-schemas/latest/processingmicrographs
description: Micrographs metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
is a: micrographs
domain: Processing
slot uri: https://w3id.org/oscem-schemas/latest/processingmicrographs
alias: micrographs
owner: Processing
domain of: Processing
is usage slot: true
usage slot name: micrographs
range: Micrographs
inlined: true
inlined as list: true

SlotDefinition
name: Processing_ctfs
definition uri: https://w3id.org/oscem-schemas/latest/processingctfs
description: CTFs metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
is a: ctfs
domain: Processing
slot uri: https://w3id.org/oscem-schemas/latest/processingctfs
alias: ctfs
owner: Processing
domain of: Processing
is usage slot: true
usage slot name: ctfs
range: CTFs
inlined: true
inlined as list: true

SlotDefinition
name: Processing_coordinates
definition uri: https://w3id.org/oscem-schemas/latest/processingcoordinates
description: Coordinates metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
is a: coordinates
domain: Processing
slot uri: https://w3id.org/oscem-schemas/latest/processingcoordinates
alias: coordinates
owner: Processing
domain of: Processing
is usage slot: true
usage slot name: coordinates
range: Coordinates
inlined: true
inlined as list: true

SlotDefinition
name: Processing_classes2D
definition uri: https://w3id.org/oscem-schemas/latest/processingclasses2D
description: Classes 2D metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
is a: classes2D
domain: Processing
slot uri: https://w3id.org/oscem-schemas/latest/processingclasses2D
alias: classes2D
owner: Processing
domain of: Processing
is usage slot: true
usage slot name: classes2D
range: Classes2D
inlined: true
inlined as list: true

SlotDefinition
name: Processing_classes3D
definition uri: https://w3id.org/oscem-schemas/latest/processingclasses3D
description: Classes 3D metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
is a: classes3D
domain: Processing
slot uri: https://w3id.org/oscem-schemas/latest/processingclasses3D
alias: classes3D
owner: Processing
domain of: Processing
is usage slot: true
usage slot name: classes3D
range: Classes3D
inlined: true
inlined as list: true

SlotDefinition
name: Processing_volumes
definition uri: https://w3id.org/oscem-schemas/latest/processingvolumes
description: Volume metadata
from schema: https://w3id.org/oscem-schemas/latest/processing
is a: volumes
domain: Processing
slot uri: https://w3id.org/oscem-schemas/latest/processingvolumes
alias: volumes
owner: Processing
domain of: Processing
is usage slot: true
usage slot name: volumes
range: Volumes
multivalued: true
inlined: true
inlined as list: true

SlotDefinition
name: QuantityValue_unit
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesunit
description: the unit of a given value
from schema: https://w3id.org/oscem-schemas/latest/custom_types
mappings: http://example.org/UNKNOWN/qudt/hasUnit
is a: unit
domain: QuantityValue
slot uri: http://example.org/UNKNOWN/qudt/hasUnit
alias: unit
owner: QuantityValue
domain of: QuantityValue
is usage slot: true
usage slot name: unit
range: string
required: true

SlotDefinition
name: QuantityValue_value
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesvalue
description: the value of a field with a unit
from schema: https://w3id.org/oscem-schemas/latest/custom_types
mappings: http://example.org/UNKNOWN/qudt/hasQuantityKind
is a: value
domain: QuantityValue
slot uri: http://example.org/UNKNOWN/qudt/hasQuantityKind
alias: value
owner: QuantityValue
domain of: QuantityValue
is usage slot: true
usage slot name: value
range: float
required: true

SlotDefinition
name: Descriptor_descriptor_name
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptor_name
description: Name defining the descriptor
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: descriptor_name
domain: Descriptor
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptor_name
alias: descriptor_name
owner: Descriptor
domain of: Descriptor
is usage slot: true
usage slot name: descriptor_name
range: string
required: true

SlotDefinition
name: Descriptor_descriptor_thing
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptor_thing
description: Description of the descriptor
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: descriptor_thing
domain: Descriptor
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptor_thing
alias: descriptor_thing
owner: Descriptor
domain of: Descriptor
is usage slot: true
usage slot name: descriptor_thing
range: Any
inlined: true
inlined as list: true

SlotDefinition
name: Movies_dose_per_image
definition uri: https://w3id.org/oscem-schemas/latest/moviesdose_per_image
description: Dose per image
from schema: https://w3id.org/oscem-schemas/latest/movies
is a: dose_per_image
domain: Movies
slot uri: https://w3id.org/oscem-schemas/latest/moviesdose_per_image
alias: dose_per_image
owner: Movies
domain of: Movies
is usage slot: true
usage slot name: dose_per_image
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: Movies_initial_dose
definition uri: https://w3id.org/oscem-schemas/latest/moviesinitial_dose
description: Initial dose
from schema: https://w3id.org/oscem-schemas/latest/movies
is a: initial_dose
domain: Movies
slot uri: https://w3id.org/oscem-schemas/latest/moviesinitial_dose
alias: initial_dose
owner: Movies
domain of: Movies
is usage slot: true
usage slot name: initial_dose
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: Movies_gain_image
definition uri: https://w3id.org/oscem-schemas/latest/moviesgain_image
description: Gain image filename
from schema: https://w3id.org/oscem-schemas/latest/movies
is a: gain_image
domain: Movies
slot uri: https://w3id.org/oscem-schemas/latest/moviesgain_image
alias: gain_image
owner: Movies
domain of: Movies
is usage slot: true
usage slot name: gain_image
range: string

SlotDefinition
name: Movies_dark_image
definition uri: https://w3id.org/oscem-schemas/latest/moviesdark_image
description: Dark image filename
from schema: https://w3id.org/oscem-schemas/latest/movies
is a: dark_image
domain: Movies
slot uri: https://w3id.org/oscem-schemas/latest/moviesdark_image
alias: dark_image
owner: Movies
domain of: Movies
is usage slot: true
usage slot name: dark_image
range: string

SlotDefinition
name: Movies_descriptors
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
description: List of custom descriptors for user-defined key-value pairs describing how movies were obtained or any related information
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: descriptors
domain: Movies
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
alias: descriptors
owner: Movies
domain of: Movies
is usage slot: true
usage slot name: descriptors
range: Descriptors
multivalued: true
inlined: true
inlined as list: true

SlotDefinition
name: Micrographs_number_micrographs
definition uri: https://w3id.org/oscem-schemas/latest/micrographsnumber_micrographs
description: Number of micrographs
from schema: https://w3id.org/oscem-schemas/latest/micrographs
is a: number_micrographs
domain: Micrographs
slot uri: https://w3id.org/oscem-schemas/latest/micrographsnumber_micrographs
alias: number_micrographs
owner: Micrographs
domain of: Micrographs
is usage slot: true
usage slot name: number_micrographs
range: float
required: true

SlotDefinition
name: Micrographs_descriptors
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
description: List of custom descriptors for user-defined key-value pairs describing how movies were obtained or any related information
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: descriptors
domain: Micrographs
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
alias: descriptors
owner: Micrographs
domain of: Micrographs
is usage slot: true
usage slot name: descriptors
range: Descriptors
multivalued: true
inlined: true
inlined as list: true

SlotDefinition
name: CTFs_amplitude_contrast
definition uri: https://w3id.org/oscem-schemas/latest/ctfsamplitude_contrast
description: Amplitude contrast
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: amplitude_contrast
domain: CTFs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsamplitude_contrast
alias: amplitude_contrast
owner: CTFs
domain of: CTFs
is usage slot: true
usage slot name: amplitude_contrast
range: float

SlotDefinition
name: CTFs_defocus
definition uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus
description: Defocus metadata
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: defocus
domain: CTFs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus
alias: defocus
owner: CTFs
domain of: CTFs
is usage slot: true
usage slot name: defocus
range: Defocus
inlined: true
inlined as list: true

SlotDefinition
name: CTFs_resolution
definition uri: https://w3id.org/oscem-schemas/latest/ctfsresolution
description: Resolution metadata
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: resolution
domain: CTFs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsresolution
alias: resolution
owner: CTFs
domain of: CTFs
is usage slot: true
usage slot name: resolution
range: Resolution
inlined: true
inlined as list: true

SlotDefinition
name: CTFs_astigmatism
definition uri: https://w3id.org/oscem-schemas/latest/ctfsastigmatism
description: Astigmatism metadata
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: astigmatism
domain: CTFs
slot uri: https://w3id.org/oscem-schemas/latest/ctfsastigmatism
alias: astigmatism
owner: CTFs
domain of: CTFs
is usage slot: true
usage slot name: astigmatism
range: Astigmatism
inlined: true
inlined as list: true

SlotDefinition
name: CTFs_descriptors
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
description: List of custom descriptors for user-defined key-value pairs describing how movies were obtained or any related information
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: descriptors
domain: CTFs
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
alias: descriptors
owner: CTFs
domain of: CTFs
is usage slot: true
usage slot name: descriptors
range: Descriptors
multivalued: true
inlined: true
inlined as list: true

SlotDefinition
name: Defocus_output_min_defocus
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_min_defocus
description: Minimum defocus
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: output_min_defocus
domain: Defocus
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_min_defocus
alias: output_min_defocus
owner: Defocus
domain of: Defocus
is usage slot: true
usage slot name: output_min_defocus
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: Defocus_output_max_defocus
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_max_defocus
description: Maximum defocus
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: output_max_defocus
domain: Defocus
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_max_defocus
alias: output_max_defocus
owner: Defocus
domain of: Defocus
is usage slot: true
usage slot name: output_max_defocus
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: Defocus_output_avg_defocus
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_avg_defocus
description: Average value of defocus
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: output_avg_defocus
domain: Defocus
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_avg_defocus
alias: output_avg_defocus
owner: Defocus
domain of: Defocus
is usage slot: true
usage slot name: output_avg_defocus
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: Defocus_defocus_histogram
definition uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus_histogram
description: Filename of the defocus values histogram
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: defocus_histogram
domain: Defocus
slot uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus_histogram
alias: defocus_histogram
owner: Defocus
domain of: Defocus
is usage slot: true
usage slot name: defocus_histogram
range: string

SlotDefinition
name: Defocus_defocus_micrograph_examples
definition uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus_micrograph_examples
description: Filename of micrographs shown as examples in ascending order of defocus value
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: defocus_micrograph_examples
domain: Defocus
slot uri: https://w3id.org/oscem-schemas/latest/ctfsdefocus_micrograph_examples
alias: defocus_micrograph_examples
owner: Defocus
domain of: Defocus
is usage slot: true
usage slot name: defocus_micrograph_examples
range: string

SlotDefinition
name: Resolution_output_min_resolution
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_min_resolution
description: Minimum resolution
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: output_min_resolution
domain: Resolution
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_min_resolution
alias: output_min_resolution
owner: Resolution
domain of: Resolution
is usage slot: true
usage slot name: output_min_resolution
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: Resolution_output_max_resolution
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_max_resolution
description: Maximum resolution
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: output_max_resolution
domain: Resolution
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_max_resolution
alias: output_max_resolution
owner: Resolution
domain of: Resolution
is usage slot: true
usage slot name: output_max_resolution
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: Resolution_output_avg_resolution
definition uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_avg_resolution
description: Average value of resolution
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: output_avg_resolution
domain: Resolution
slot uri: https://w3id.org/oscem-schemas/latest/ctfsoutput_avg_resolution
alias: output_avg_resolution
owner: Resolution
domain of: Resolution
is usage slot: true
usage slot name: output_avg_resolution
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: Resolution_resolution_histogram
definition uri: https://w3id.org/oscem-schemas/latest/ctfsresolution_histogram
description: Filename of the resolution values histogram
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: resolution_histogram
domain: Resolution
slot uri: https://w3id.org/oscem-schemas/latest/ctfsresolution_histogram
alias: resolution_histogram
owner: Resolution
domain of: Resolution
is usage slot: true
usage slot name: resolution_histogram
range: string

SlotDefinition
name: Astigmatism_astigmatism_histogram
definition uri: https://w3id.org/oscem-schemas/latest/ctfsastigmatism_histogram
description: Filename of the astigmatism values histogram
from schema: https://w3id.org/oscem-schemas/latest/ctfs
is a: astigmatism_histogram
domain: Astigmatism
slot uri: https://w3id.org/oscem-schemas/latest/ctfsastigmatism_histogram
alias: astigmatism_histogram
owner: Astigmatism
domain of: Astigmatism
is usage slot: true
usage slot name: astigmatism_histogram
range: string

SlotDefinition
name: Coordinates_number_particles
definition uri: https://w3id.org/oscem-schemas/latest/coordinatesnumber_particles
description: Total number of particles
from schema: https://w3id.org/oscem-schemas/latest/coordinates
is a: number_particles
domain: Coordinates
slot uri: https://w3id.org/oscem-schemas/latest/coordinatesnumber_particles
alias: number_particles
owner: Coordinates
domain of: Coordinates
is usage slot: true
usage slot name: number_particles
range: integer
required: true

SlotDefinition
name: Coordinates_particles_per_micrograph
definition uri: https://w3id.org/oscem-schemas/latest/coordinatesparticles_per_micrograph
description: Mean number of particles per micrograph
from schema: https://w3id.org/oscem-schemas/latest/coordinates
is a: particles_per_micrograph
domain: Coordinates
slot uri: https://w3id.org/oscem-schemas/latest/coordinatesparticles_per_micrograph
alias: particles_per_micrograph
owner: Coordinates
domain of: Coordinates
is usage slot: true
usage slot name: particles_per_micrograph
range: float

SlotDefinition
name: Coordinates_num_source_micrographs
definition uri: https://w3id.org/oscem-schemas/latest/coordinatesnum_source_micrographs
description: Total number of micrographs from which coordinates come from
from schema: https://w3id.org/oscem-schemas/latest/coordinates
is a: num_source_micrographs
domain: Coordinates
slot uri: https://w3id.org/oscem-schemas/latest/coordinatesnum_source_micrographs
alias: num_source_micrographs
owner: Coordinates
domain of: Coordinates
is usage slot: true
usage slot name: num_source_micrographs
range: integer

SlotDefinition
name: Coordinates_particles_histogram
definition uri: https://w3id.org/oscem-schemas/latest/coordinatesparticles_histogram
description: Filename of histogram for particle number per micrograph
from schema: https://w3id.org/oscem-schemas/latest/coordinates
is a: particles_histogram
domain: Coordinates
slot uri: https://w3id.org/oscem-schemas/latest/coordinatesparticles_histogram
alias: particles_histogram
owner: Coordinates
domain of: Coordinates
is usage slot: true
usage slot name: particles_histogram
range: string

SlotDefinition
name: Coordinates_micrograph_examples
definition uri: https://w3id.org/oscem-schemas/latest/coordinatesmicrograph_examples
description: Filename of micrographs shown as examples in descending order based on the number of particles
from schema: https://w3id.org/oscem-schemas/latest/coordinates
is a: micrograph_examples
domain: Coordinates
slot uri: https://w3id.org/oscem-schemas/latest/coordinatesmicrograph_examples
alias: micrograph_examples
owner: Coordinates
domain of: Coordinates
is usage slot: true
usage slot name: micrograph_examples
range: string

SlotDefinition
name: Coordinates_descriptors
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
description: List of custom descriptors for user-defined key-value pairs describing how movies were obtained or any related information
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: descriptors
domain: Coordinates
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
alias: descriptors
owner: Coordinates
domain of: Coordinates
is usage slot: true
usage slot name: descriptors
range: Descriptors
multivalued: true
inlined: true
inlined as list: true

SlotDefinition
name: Classes2D_particles_per_2Dclass
definition uri: https://w3id.org/oscem-schemas/latest/classes2Dparticles_per_2Dclass
description: Number of particles per 2D class
from schema: https://w3id.org/oscem-schemas/latest/classes2D
is a: particles_per_2Dclass
domain: Classes2D
slot uri: https://w3id.org/oscem-schemas/latest/classes2Dparticles_per_2Dclass
alias: particles_per_2Dclass
owner: Classes2D
domain of: Classes2D
is usage slot: true
usage slot name: particles_per_2Dclass
range: integer
multivalued: true

SlotDefinition
name: Classes2D_images_classes_2D
definition uri: https://w3id.org/oscem-schemas/latest/classes2Dimages_classes_2D
description: Filename of the image containing 2D class images
from schema: https://w3id.org/oscem-schemas/latest/classes2D
is a: images_classes_2D
domain: Classes2D
slot uri: https://w3id.org/oscem-schemas/latest/classes2Dimages_classes_2D
alias: images_classes_2D
owner: Classes2D
domain of: Classes2D
is usage slot: true
usage slot name: images_classes_2D
range: string

SlotDefinition
name: Classes2D_resolution_classes_2D
definition uri: https://w3id.org/oscem-schemas/latest/classes2Dresolution_classes_2D
description: Resolution of classes 2D
from schema: https://w3id.org/oscem-schemas/latest/classes2D
is a: resolution_classes_2D
domain: Classes2D
slot uri: https://w3id.org/oscem-schemas/latest/classes2Dresolution_classes_2D
alias: resolution_classes_2D
owner: Classes2D
domain of: Classes2D
is usage slot: true
usage slot name: resolution_classes_2D
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: Classes2D_descriptors
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
description: List of custom descriptors for user-defined key-value pairs describing how movies were obtained or any related information
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: descriptors
domain: Classes2D
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
alias: descriptors
owner: Classes2D
domain of: Classes2D
is usage slot: true
usage slot name: descriptors
range: Descriptors
multivalued: true
inlined: true
inlined as list: true

SlotDefinition
name: Classes3D_particles_per_3Dclass
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dparticles_per_3Dclass
description: Number of particles per 3D class
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: particles_per_3Dclass
domain: Classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dparticles_per_3Dclass
alias: particles_per_3Dclass
owner: Classes3D
domain of: Classes3D
is usage slot: true
usage slot name: particles_per_3Dclass
range: integer
multivalued: true

SlotDefinition
name: Classes3D_images_classes_3D
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dimages_classes_3D
description: Filename of the image containing 3D class images
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: images_classes_3D
domain: Classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dimages_classes_3D
alias: images_classes_3D
owner: Classes3D
domain of: Classes3D
is usage slot: true
usage slot name: images_classes_3D
range: string

SlotDefinition
name: Classes3D_volume
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dvolume
description: Describes volume(s) obtained
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: volume
domain: Classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dvolume
alias: volume
owner: Classes3D
domain of: Classes3D
is usage slot: true
usage slot name: volume
range: Volume
multivalued: true
inlined: true
inlined as list: true

SlotDefinition
name: Classes3D_resolution_classes_3D
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dresolution_classes_3D
description: Resolution of volume
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: resolution_classes_3D
domain: Classes3D
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dresolution_classes_3D
alias: resolution_classes_3D
owner: Classes3D
domain of: Classes3D
is usage slot: true
usage slot name: resolution_classes_3D
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: Classes3D_descriptors
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
description: List of custom descriptors for user-defined key-value pairs describing how movies were obtained or any related information
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: descriptors
domain: Classes3D
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
alias: descriptors
owner: Classes3D
domain of: Classes3D
is usage slot: true
usage slot name: descriptors
range: Descriptors
multivalued: true
inlined: true
inlined as list: true

SlotDefinition
name: Volume_orthogonal_slices
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices
description: orthogonal slices of volume
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: orthogonal_slices
domain: Volume
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices
alias: orthogonal_slices
owner: Volume
domain of: Volume
is usage slot: true
usage slot name: orthogonal_slices
range: OrthogonalSlices
inlined: true
inlined as list: true

SlotDefinition
name: Volume_isosurface_images
definition uri: https://w3id.org/oscem-schemas/latest/classes3Disosurface_images
description: isosurface images of volume
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: isosurface_images
domain: Volume
slot uri: https://w3id.org/oscem-schemas/latest/classes3Disosurface_images
alias: isosurface_images
owner: Volume
domain of: Volume
is usage slot: true
usage slot name: isosurface_images
range: IsosurfaceImages
inlined: true
inlined as list: true

SlotDefinition
name: OrthogonalSlices_orthogonal_slices_X
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_X
description: Filename of orthogonal slices in X direction
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: orthogonal_slices_X
domain: OrthogonalSlices
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_X
alias: orthogonal_slices_X
owner: OrthogonalSlices
domain of: OrthogonalSlices
is usage slot: true
usage slot name: orthogonal_slices_X
range: string

SlotDefinition
name: OrthogonalSlices_orthogonal_slices_Y
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_Y
description: Filename of orthogonal slices in Y direction
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: orthogonal_slices_Y
domain: OrthogonalSlices
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_Y
alias: orthogonal_slices_Y
owner: OrthogonalSlices
domain of: OrthogonalSlices
is usage slot: true
usage slot name: orthogonal_slices_Y
range: string

SlotDefinition
name: OrthogonalSlices_orthogonal_slices_Z
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_Z
description: Filename of orthogonal slices in Z direction
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: orthogonal_slices_Z
domain: OrthogonalSlices
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices_Z
alias: orthogonal_slices_Z
owner: OrthogonalSlices
domain of: OrthogonalSlices
is usage slot: true
usage slot name: orthogonal_slices_Z
range: string

SlotDefinition
name: IsosurfaceImages_front_view
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dfront_view
description: Filename of the front view isosurface image
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: front_view
domain: IsosurfaceImages
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dfront_view
alias: front_view
owner: IsosurfaceImages
domain of: IsosurfaceImages
is usage slot: true
usage slot name: front_view
range: string

SlotDefinition
name: IsosurfaceImages_side_view
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dside_view
description: Filename of the side view isosurface image
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: side_view
domain: IsosurfaceImages
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dside_view
alias: side_view
owner: IsosurfaceImages
domain of: IsosurfaceImages
is usage slot: true
usage slot name: side_view
range: string

SlotDefinition
name: IsosurfaceImages_top_view
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dtop_view
description: Filename of the top view isosurface image
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: top_view
domain: IsosurfaceImages
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dtop_view
alias: top_view
owner: IsosurfaceImages
domain of: IsosurfaceImages
is usage slot: true
usage slot name: top_view
range: string

SlotDefinition
name: Volumes_volume_type
definition uri: https://w3id.org/oscem-schemas/latest/volumesvolume_type
description: Indicates the type of volume
from schema: https://w3id.org/oscem-schemas/latest/volumes
is a: volume_type
domain: Volumes
slot uri: https://w3id.org/oscem-schemas/latest/volumesvolume_type
alias: volume_type
owner: Volumes
domain of: Volumes
is usage slot: true
usage slot name: volume_type
range: string
required: true

SlotDefinition
name: Volumes_vol_number_particles
definition uri: https://w3id.org/oscem-schemas/latest/volumesvol_number_particles
description: Number of particles associated to volume
from schema: https://w3id.org/oscem-schemas/latest/volumes
is a: vol_number_particles
domain: Volumes
slot uri: https://w3id.org/oscem-schemas/latest/volumesvol_number_particles
alias: vol_number_particles
owner: Volumes
domain of: Volumes
is usage slot: true
usage slot name: vol_number_particles
range: integer

SlotDefinition
name: Volumes_size
definition uri: https://w3id.org/oscem-schemas/latest/volumessize
description: Size of the volume
from schema: https://w3id.org/oscem-schemas/latest/volumes
is a: size
domain: Volumes
slot uri: https://w3id.org/oscem-schemas/latest/volumessize
alias: size
owner: Volumes
domain of: Volumes
is usage slot: true
usage slot name: size
range: integer
multivalued: true

SlotDefinition
name: Volumes_orthogonal_slices
definition uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices
description: orthogonal slices of volume
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: orthogonal_slices
domain: Volumes
slot uri: https://w3id.org/oscem-schemas/latest/classes3Dorthogonal_slices
alias: orthogonal_slices
owner: Volumes
domain of: Volumes
is usage slot: true
usage slot name: orthogonal_slices
range: OrthogonalSlices
inlined: true
inlined as list: true

SlotDefinition
name: Volumes_isosurface_images
definition uri: https://w3id.org/oscem-schemas/latest/classes3Disosurface_images
description: isosurface images of volume
from schema: https://w3id.org/oscem-schemas/latest/classes3D
is a: isosurface_images
domain: Volumes
slot uri: https://w3id.org/oscem-schemas/latest/classes3Disosurface_images
alias: isosurface_images
owner: Volumes
domain of: Volumes
is usage slot: true
usage slot name: isosurface_images
range: IsosurfaceImages
inlined: true
inlined as list: true

SlotDefinition
name: Volumes_vol_resolution
definition uri: https://w3id.org/oscem-schemas/latest/volumesvol_resolution
description: Resolution of volume
from schema: https://w3id.org/oscem-schemas/latest/volumes
is a: vol_resolution
domain: Volumes
slot uri: https://w3id.org/oscem-schemas/latest/volumesvol_resolution
alias: vol_resolution
owner: Volumes
domain of: Volumes
is usage slot: true
usage slot name: vol_resolution
range: QuantityValue
inlined: true
inlined as list: true

SlotDefinition
name: Volumes_descriptors
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
description: List of custom descriptors for user-defined key-value pairs describing how movies were obtained or any related information
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: descriptors
domain: Volumes
slot uri: https://w3id.org/oscem-schemas/latest/custom_typesdescriptors
alias: descriptors
owner: Volumes
domain of: Volumes
is usage slot: true
usage slot name: descriptors
range: Descriptors
multivalued: true
inlined: true
inlined as list: true

ClassDefinition
name: Processing
definition uri: https://w3id.org/oscem-schemas/latest/processingProcessing
description: Set of parameters describing the data processing
from schema: https://w3id.org/oscem-schemas/latest/processing
slots: Processing_movies
slots: Processing_micrographs
slots: Processing_ctfs
slots: Processing_coordinates
slots: Processing_classes2D
slots: Processing_classes3D
slots: Processing_volumes
class uri: https://w3id.org/oscem-schemas/latest/processingProcessing

ClassDefinition
name: Any
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesAny
description: Any type, used as the base for type-narrowing.
from schema: https://w3id.org/oscem-schemas/latest/custom_types
mappings: linkml:Any
class uri: https://w3id.org/linkml/Any

ClassDefinition
name: Range
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesRange
description: A range constructed from min and max
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slots: minimal
slots: maximal
class uri: https://w3id.org/oscem-schemas/latest/custom_typesRange

ClassDefinition
name: Series
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesSeries
description: A series of numbers constructed from min, max, and increment
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: Range
slots: minimal
slots: maximal
slots: increment
class uri: https://w3id.org/oscem-schemas/latest/custom_typesSeries

ClassDefinition
name: ImageSize
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesImageSize
description: size of a 2D image (in integer units)
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slots: height
slots: width
class uri: https://w3id.org/oscem-schemas/latest/custom_typesImageSize

ClassDefinition
name: BoundingBox2D
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesBoundingBox2D
description: an axis-aligned 2D bounding box (float units)
from schema: https://w3id.org/oscem-schemas/latest/custom_types
slots: x_min
slots: x_max
slots: y_min
slots: y_max
class uri: https://w3id.org/oscem-schemas/latest/custom_typesBoundingBox2D

ClassDefinition
name: QuantityValue
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesQuantityValue
description: if a value has a unit, it should be given as a unit value pair.
from schema: https://w3id.org/oscem-schemas/latest/custom_types
mappings: qudt:quantityValue
slots: QuantityValue_unit
slots: QuantityValue_value
class uri: http://example.org/UNKNOWN/qudt/quantityValue

ClassDefinition
name: QuantitySI
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesQuantitySI
description: unit value extended to have two additional fields si_value and si_unit
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: QuantityValue
slots: QuantityValue_unit
slots: QuantityValue_value
slots: valueSI
slots: unitSI
class uri: https://w3id.org/oscem-schemas/latest/custom_typesQuantitySI

ClassDefinition
name: Descriptor
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesDescriptor
description: List of custom descriptors for user-defined key-value pairs describing how micrographs were obtained or any related information
from schema: https://w3id.org/oscem-schemas/latest/custom_types
abstract: true
slots: Descriptor_descriptor_name
slots: Descriptor_descriptor_thing
class uri: https://w3id.org/oscem-schemas/latest/custom_typesDescriptor

ClassDefinition
name: Descriptors
definition uri: https://w3id.org/oscem-schemas/latest/custom_typesDescriptors
from schema: https://w3id.org/oscem-schemas/latest/custom_types
is a: Descriptor
slots: Descriptor_descriptor_name
slots: Descriptor_descriptor_thing
class uri: https://w3id.org/oscem-schemas/latest/custom_typesDescriptors

ClassDefinition
name: Movies
definition uri: https://w3id.org/oscem-schemas/latest/moviesMovies
description: Class representing movies metadata
from schema: https://w3id.org/oscem-schemas/latest/movies
slots: Movies_dose_per_image
slots: Movies_initial_dose
slots: Movies_gain_image
slots: Movies_dark_image
slots: Movies_descriptors
class uri: https://w3id.org/oscem-schemas/latest/moviesMovies

ClassDefinition
name: Micrographs
definition uri: https://w3id.org/oscem-schemas/latest/micrographsMicrographs
description: Class representing micrographs metadata
from schema: https://w3id.org/oscem-schemas/latest/micrographs
slots: Micrographs_number_micrographs
slots: Micrographs_descriptors
class uri: https://w3id.org/oscem-schemas/latest/micrographsMicrographs

ClassDefinition
name: CTFs
definition uri: https://w3id.org/oscem-schemas/latest/ctfsCTFs
description: Class representing Contrast Transfer Function (CTF) metadata
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slots: CTFs_amplitude_contrast
slots: CTFs_defocus
slots: CTFs_resolution
slots: CTFs_astigmatism
slots: CTFs_descriptors
class uri: https://w3id.org/oscem-schemas/latest/ctfsCTFs

ClassDefinition
name: Defocus
definition uri: https://w3id.org/oscem-schemas/latest/ctfsDefocus
description: Defocus-related metadata
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slots: Defocus_output_min_defocus
slots: Defocus_output_max_defocus
slots: Defocus_output_avg_defocus
slots: Defocus_defocus_histogram
slots: Defocus_defocus_micrograph_examples
class uri: https://w3id.org/oscem-schemas/latest/ctfsDefocus

ClassDefinition
name: Resolution
definition uri: https://w3id.org/oscem-schemas/latest/ctfsResolution
description: Resolution-related metadata
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slots: Resolution_output_min_resolution
slots: Resolution_output_max_resolution
slots: Resolution_output_avg_resolution
slots: Resolution_resolution_histogram
class uri: https://w3id.org/oscem-schemas/latest/ctfsResolution

ClassDefinition
name: Astigmatism
definition uri: https://w3id.org/oscem-schemas/latest/ctfsAstigmatism
description: Astigmatism-related metadata
from schema: https://w3id.org/oscem-schemas/latest/ctfs
slots: Astigmatism_astigmatism_histogram
class uri: https://w3id.org/oscem-schemas/latest/ctfsAstigmatism

ClassDefinition
name: Coordinates
definition uri: https://w3id.org/oscem-schemas/latest/coordinatesCoordinates
description: Class representing coordinates metadata
from schema: https://w3id.org/oscem-schemas/latest/coordinates
slots: Coordinates_number_particles
slots: Coordinates_particles_per_micrograph
slots: Coordinates_num_source_micrographs
slots: Coordinates_particles_histogram
slots: Coordinates_micrograph_examples
slots: Coordinates_descriptors
class uri: https://w3id.org/oscem-schemas/latest/coordinatesCoordinates

ClassDefinition
name: Classes2D
definition uri: https://w3id.org/oscem-schemas/latest/classes2DClasses2D
description: Class representing classes 2D metadata
from schema: https://w3id.org/oscem-schemas/latest/classes2D
slots: Classes2D_particles_per_2Dclass
slots: Classes2D_images_classes_2D
slots: Classes2D_resolution_classes_2D
slots: Classes2D_descriptors
class uri: https://w3id.org/oscem-schemas/latest/classes2DClasses2D

ClassDefinition
name: Classes3D
definition uri: https://w3id.org/oscem-schemas/latest/classes3DClasses3D
description: Class representing classes 3D metadata
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slots: Classes3D_particles_per_3Dclass
slots: Classes3D_images_classes_3D
slots: Classes3D_volume
slots: Classes3D_resolution_classes_3D
slots: Classes3D_descriptors
class uri: https://w3id.org/oscem-schemas/latest/classes3DClasses3D

ClassDefinition
name: Volume
definition uri: https://w3id.org/oscem-schemas/latest/classes3DVolume
description: Class describing volume(s) obtained
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slots: Volume_orthogonal_slices
slots: Volume_isosurface_images
class uri: https://w3id.org/oscem-schemas/latest/classes3DVolume

ClassDefinition
name: OrthogonalSlices
definition uri: https://w3id.org/oscem-schemas/latest/classes3DOrthogonalSlices
description: Class for the orthogonal slices
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slots: OrthogonalSlices_orthogonal_slices_X
slots: OrthogonalSlices_orthogonal_slices_Y
slots: OrthogonalSlices_orthogonal_slices_Z
class uri: https://w3id.org/oscem-schemas/latest/classes3DOrthogonalSlices

ClassDefinition
name: IsosurfaceImages
definition uri: https://w3id.org/oscem-schemas/latest/classes3DIsosurfaceImages
description: Class for the isosurface images
from schema: https://w3id.org/oscem-schemas/latest/classes3D
slots: IsosurfaceImages_front_view
slots: IsosurfaceImages_side_view
slots: IsosurfaceImages_top_view
class uri: https://w3id.org/oscem-schemas/latest/classes3DIsosurfaceImages

ClassDefinition
name: Volumes
definition uri: https://w3id.org/oscem-schemas/latest/volumesVolumes
description: Class representing volume metadata
from schema: https://w3id.org/oscem-schemas/latest/volumes
slots: Volumes_volume_type
slots: Volumes_vol_number_particles
slots: Volumes_size
slots: Volumes_orthogonal_slices
slots: Volumes_isosurface_images
slots: Volumes_vol_resolution
slots: Volumes_descriptors
class uri: https://w3id.org/oscem-schemas/latest/volumesVolumes