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Class: OverallMolecule

Description of the overall molecule

URI: https://w3id.org/osc-em/oscem-schemas-subtomo/:OverallMolecule

erDiagram OverallMolecule { MoleculeClassEnum molecular_overall_type string name_sample string source AssemblyEnum assembly } QuantitySI { float valueSI string unitSI string unit float value } OverallMolecule ||--|o QuantitySI : "molecular_weight"

Slots

Name Cardinality and Range Description Inheritance
molecular_overall_type 0..1
MoleculeClassEnum		 Description of the overall molecular type, i direct
name_sample 1
String		 Name of the full sample direct
source 1
String		 Where the sample was taken from, i direct
molecular_weight 0..1
QuantitySI		 Molecular weight in Da direct
assembly 0..1
AssemblyEnum		 What type of higher order structure your sample forms - if any direct

Usages

used by used in type used
Sample overall_molecule range OverallMolecule
SampleMolecular overall_molecule range OverallMolecule

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/osc-em/oscem-schemas-subtomo

Mappings

Mapping Type Mapped Value
self https://w3id.org/osc-em/oscem-schemas-subtomo/:OverallMolecule
native https://w3id.org/osc-em/oscem-schemas-subtomo/:OverallMolecule

LinkML Source

Direct

name: OverallMolecule
description: Description of the overall molecule
from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
slots:
- molecular_overall_type
- name_sample
- source
- molecular_weight
- assembly
slot_usage:
  molecular_overall_type:
    name: molecular_overall_type
    required: false
  name_sample:
    name: name_sample
    required: true
  source:
    name: source
    required: true
  molecular_weight:
    name: molecular_weight
  assembly:
    name: assembly
    required: false

Induced

name: OverallMolecule
description: Description of the overall molecule
from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
slot_usage:
  molecular_overall_type:
    name: molecular_overall_type
    required: false
  name_sample:
    name: name_sample
    required: true
  source:
    name: source
    required: true
  molecular_weight:
    name: molecular_weight
  assembly:
    name: assembly
    required: false
attributes:
  molecular_overall_type:
    name: molecular_overall_type
    description: Description of the overall molecular type, i.e., a complex
    from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
    rank: 1000
    alias: molecular_overall_type
    owner: OverallMolecule
    domain_of:
    - OverallMolecule
    range: MoleculeClassEnum
    required: false
  name_sample:
    name: name_sample
    description: Name of the full sample
    from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
    rank: 1000
    alias: name_sample
    owner: OverallMolecule
    domain_of:
    - OverallMolecule
    range: string
    required: true
  source:
    name: source
    description: Where the sample was taken from, i.e., natural host, recombinantly
      expressed, etc.
    from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
    rank: 1000
    alias: source
    owner: OverallMolecule
    domain_of:
    - OverallMolecule
    range: string
    required: true
  molecular_weight:
    name: molecular_weight
    description: Molecular weight in Da
    from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
    rank: 1000
    alias: molecular_weight
    owner: OverallMolecule
    domain_of:
    - OverallMolecule
    range: QuantitySI
  assembly:
    name: assembly
    description: What type of higher order structure your sample forms - if any.
    from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
    rank: 1000
    alias: assembly
    owner: OverallMolecule
    domain_of:
    - OverallMolecule
    range: AssemblyEnum
    required: false