Class: EMDatasetTomo

cryo electron tomography dataset, with a focus on a single protein (complex) & subtomogram averaging

URI: https://w3id.org/osc-em/oscem-schemas-subtomo/:EMDatasetTomo

classDiagram class EMDatasetTomo click EMDatasetTomo href "../EMDatasetTomo" EMDatasetBase <|-- EMDatasetTomo click EMDatasetBase href "../EMDatasetBase" EMDatasetTomo : acquisition EMDatasetTomo --> "1" AcquisitionTomo : acquisition click AcquisitionTomo href "../AcquisitionTomo" EMDatasetTomo : instrument EMDatasetTomo --> "1" Instrument : instrument click Instrument href "../Instrument" EMDatasetTomo : organizational EMDatasetTomo --> "1" Organizational : organizational click Organizational href "../Organizational" EMDatasetTomo : sample EMDatasetTomo --> "1" Sample : sample click Sample href "../Sample"

Inheritance

EMDatasetBase
- EMDatasetTomo

Slots

Name	Cardinality and Range	Description	Inheritance
acquisition	1 AcquisitionTomo	Describe the data acquisition parameters	EMDatasetBase
instrument	1 Instrument	Describe the instrument used to acquire the data	EMDatasetBase
sample	1 Sample	Sample information	EMDatasetBase
organizational	1 Organizational	Information on authors and grants	EMDatasetBase

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/osc-em/oscem-schemas-subtomo

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/osc-em/oscem-schemas-subtomo/:EMDatasetTomo
native	https://w3id.org/osc-em/oscem-schemas-subtomo/:EMDatasetTomo

LinkML Source

Direct

name: EMDatasetTomo
description: cryo electron tomography dataset, with a focus on a single protein (complex)
  & subtomogram averaging
from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
is_a: EMDatasetBase
slot_usage:
  acquisition:
    name: acquisition
    description: Describe the data acquisition parameters
    range: AcquisitionTomo
    required: true
  instrument:
    name: instrument
    description: Describe the instrument used to acquire the data
    range: Instrument
    required: true
  sample:
    name: sample
    description: Sample information
    range: Sample
    required: true
  organizational:
    name: organizational
    description: Information on authors and grants
    range: Organizational
    required: true
tree_root: true

Induced

name: EMDatasetTomo
description: cryo electron tomography dataset, with a focus on a single protein (complex)
  & subtomogram averaging
from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
is_a: EMDatasetBase
slot_usage:
  acquisition:
    name: acquisition
    description: Describe the data acquisition parameters
    range: AcquisitionTomo
    required: true
  instrument:
    name: instrument
    description: Describe the instrument used to acquire the data
    range: Instrument
    required: true
  sample:
    name: sample
    description: Sample information
    range: Sample
    required: true
  organizational:
    name: organizational
    description: Information on authors and grants
    range: Organizational
    required: true
attributes:
  acquisition:
    name: acquisition
    description: Describe the data acquisition parameters
    from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
    rank: 1000
    alias: acquisition
    owner: EMDatasetTomo
    domain_of:
    - EMDatasetBase
    range: AcquisitionTomo
    required: true
  instrument:
    name: instrument
    description: Describe the instrument used to acquire the data
    from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
    rank: 1000
    alias: instrument
    owner: EMDatasetTomo
    domain_of:
    - EMDatasetBase
    range: Instrument
    required: true
  sample:
    name: sample
    description: Sample information
    from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
    rank: 1000
    alias: sample
    owner: EMDatasetTomo
    domain_of:
    - EMDatasetBase
    range: Sample
    required: true
  organizational:
    name: organizational
    description: Information on authors and grants
    from_schema: https://w3id.org/osc-em/oscem-schemas-subtomo
    rank: 1000
    alias: organizational
    owner: EMDatasetTomo
    domain_of:
    - EMDatasetBase
    range: Organizational
    required: true
tree_root: true