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Class: Volumes

Class representing volume metadata

URI: https://w3id.org/osc-em/oscem-schemas-spa/:Volumes

erDiagram Volumes { string volume_type integer vol_number_particles integerList size } Descriptors { string descriptor_name } Any { } QuantityValue { string unit float value } IsosurfaceImages { string front_view string side_view string top_view } OrthogonalSlices { string orthogonal_slices_X string orthogonal_slices_Y string orthogonal_slices_Z } Volumes ||--|o OrthogonalSlices : "orthogonal_slices" Volumes ||--|o IsosurfaceImages : "isosurface_images" Volumes ||--|o QuantityValue : "vol_resolution" Volumes ||--}o Descriptors : "descriptors" Descriptors ||--|o Any : "descriptor_thing"

Slots

Name Cardinality and Range Description Inheritance
volume_type 1
String		 Indicates the type of volume direct
vol_number_particles 0..1
Integer		 Number of particles associated to volume direct
size *
Integer		 Size of the volume direct
orthogonal_slices 0..1
OrthogonalSlices		 orthogonal slices of volume direct
isosurface_images 0..1
IsosurfaceImages		 isosurface images of volume direct
vol_resolution 0..1
QuantityValue		 Resolution of volume direct
descriptors *
Descriptors		 List of custom descriptors for user-defined key-value pairs describing how mo... direct

Usages

used by used in type used
Processing volumes range Volumes

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/osc-em/oscem-schemas-spa

Mappings

Mapping Type Mapped Value
self https://w3id.org/osc-em/oscem-schemas-spa/:Volumes
native https://w3id.org/osc-em/oscem-schemas-spa/:Volumes

LinkML Source

Direct

name: Volumes
description: Class representing volume metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slots:
- volume_type
- vol_number_particles
- size
- orthogonal_slices
- isosurface_images
- vol_resolution
- descriptors
slot_usage:
  volume_type:
    name: volume_type
    required: true
  vol_number_particles:
    name: vol_number_particles
    required: false
  size:
    name: size
    required: false
  orthogonal_slices:
    name: orthogonal_slices
    required: false
  isosurface_images:
    name: isosurface_images
    required: false
  vol_resolution:
    name: vol_resolution
    required: false
  descriptors:
    name: descriptors
    required: false

Induced

name: Volumes
description: Class representing volume metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slot_usage:
  volume_type:
    name: volume_type
    required: true
  vol_number_particles:
    name: vol_number_particles
    required: false
  size:
    name: size
    required: false
  orthogonal_slices:
    name: orthogonal_slices
    required: false
  isosurface_images:
    name: isosurface_images
    required: false
  vol_resolution:
    name: vol_resolution
    required: false
  descriptors:
    name: descriptors
    required: false
attributes:
  volume_type:
    name: volume_type
    description: Indicates the type of volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: volume_type
    owner: Volumes
    domain_of:
    - Volumes
    range: string
    required: true
  vol_number_particles:
    name: vol_number_particles
    description: Number of particles associated to volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: vol_number_particles
    owner: Volumes
    domain_of:
    - Volumes
    range: integer
    required: false
  size:
    name: size
    description: Size of the volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: size
    owner: Volumes
    domain_of:
    - Volumes
    range: integer
    required: false
    multivalued: true
  orthogonal_slices:
    name: orthogonal_slices
    description: orthogonal slices of volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: orthogonal_slices
    owner: Volumes
    domain_of:
    - Volume
    - Volumes
    range: OrthogonalSlices
    required: false
  isosurface_images:
    name: isosurface_images
    description: isosurface images of volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: isosurface_images
    owner: Volumes
    domain_of:
    - Volume
    - Volumes
    range: IsosurfaceImages
    required: false
  vol_resolution:
    name: vol_resolution
    description: Resolution of volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: vol_resolution
    owner: Volumes
    domain_of:
    - Volumes
    range: QuantityValue
    required: false
  descriptors:
    name: descriptors
    description: List of custom descriptors for user-defined key-value pairs describing
      how movies were obtained or any related information
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: descriptors
    owner: Volumes
    domain_of:
    - Movies
    - Micrographs
    - CTFs
    - Coordinates
    - Classes2D
    - Classes3D
    - Volumes
    range: Descriptors
    required: false
    multivalued: true