Class: Volumes

Class representing volume metadata

URI: https://w3id.org/osc-em/oscem-schemas-spa/:Volumes

classDiagram class Volumes click Volumes href "../Volumes" Volumes : descriptors Volumes --> "*" Descriptors : descriptors click Descriptors href "../Descriptors" Volumes : isosurface_images Volumes --> "0..1" IsosurfaceImages : isosurface_images click IsosurfaceImages href "../IsosurfaceImages" Volumes : orthogonal_slices Volumes --> "0..1" OrthogonalSlices : orthogonal_slices click OrthogonalSlices href "../OrthogonalSlices" Volumes : size Volumes : vol_number_particles Volumes : vol_resolution Volumes --> "0..1" QuantityValue : vol_resolution click QuantityValue href "../QuantityValue" Volumes : volume_type

Slots

Name	Cardinality and Range	Description	Inheritance
volume_type	1 String	Indicates the type of volume	direct
vol_number_particles	0..1 Integer	Number of particles associated to volume	direct
size	* Integer	Size of the volume	direct
orthogonal_slices	0..1 OrthogonalSlices	orthogonal slices of volume	direct
isosurface_images	0..1 IsosurfaceImages	isosurface images of volume	direct
vol_resolution	0..1 QuantityValue	Resolution of volume	direct
descriptors	* Descriptors	List of custom descriptors for user-defined key-value pairs describing how mo...	direct

Usages

used by	used in	type	used
Processing	volumes	range	Volumes

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/osc-em/oscem-schemas-spa

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/osc-em/oscem-schemas-spa/:Volumes
native	https://w3id.org/osc-em/oscem-schemas-spa/:Volumes

LinkML Source

Direct

name: Volumes
description: Class representing volume metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slots:
- volume_type
- vol_number_particles
- size
- orthogonal_slices
- isosurface_images
- vol_resolution
- descriptors
slot_usage:
  volume_type:
    name: volume_type
    required: true
  vol_number_particles:
    name: vol_number_particles
    required: false
  size:
    name: size
    required: false
  orthogonal_slices:
    name: orthogonal_slices
    required: false
  isosurface_images:
    name: isosurface_images
    required: false
  vol_resolution:
    name: vol_resolution
    required: false
  descriptors:
    name: descriptors
    required: false

Induced

name: Volumes
description: Class representing volume metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slot_usage:
  volume_type:
    name: volume_type
    required: true
  vol_number_particles:
    name: vol_number_particles
    required: false
  size:
    name: size
    required: false
  orthogonal_slices:
    name: orthogonal_slices
    required: false
  isosurface_images:
    name: isosurface_images
    required: false
  vol_resolution:
    name: vol_resolution
    required: false
  descriptors:
    name: descriptors
    required: false
attributes:
  volume_type:
    name: volume_type
    description: Indicates the type of volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: volume_type
    owner: Volumes
    domain_of:
    - Volumes
    range: string
    required: true
  vol_number_particles:
    name: vol_number_particles
    description: Number of particles associated to volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: vol_number_particles
    owner: Volumes
    domain_of:
    - Volumes
    range: integer
    required: false
  size:
    name: size
    description: Size of the volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: size
    owner: Volumes
    domain_of:
    - Volumes
    range: integer
    required: false
    multivalued: true
  orthogonal_slices:
    name: orthogonal_slices
    description: orthogonal slices of volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: orthogonal_slices
    owner: Volumes
    domain_of:
    - Volume
    - Volumes
    range: OrthogonalSlices
    required: false
  isosurface_images:
    name: isosurface_images
    description: isosurface images of volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: isosurface_images
    owner: Volumes
    domain_of:
    - Volume
    - Volumes
    range: IsosurfaceImages
    required: false
  vol_resolution:
    name: vol_resolution
    description: Resolution of volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: vol_resolution
    owner: Volumes
    domain_of:
    - Volumes
    range: QuantityValue
    required: false
  descriptors:
    name: descriptors
    description: List of custom descriptors for user-defined key-value pairs describing
      how movies were obtained or any related information
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: descriptors
    owner: Volumes
    domain_of:
    - Movies
    - Micrographs
    - CTFs
    - Coordinates
    - Classes2D
    - Classes3D
    - Volumes
    range: Descriptors
    required: false
    multivalued: true