Class: EMDatasetSpa

Single particle cryo electron microscopy dataset

URI: https://w3id.org/osc-em/oscem-schemas-spa/:EMDatasetSpa

classDiagram class EMDatasetSpa click EMDatasetSpa href "../EMDatasetSpa" EMDatasetBase <|-- EMDatasetSpa click EMDatasetBase href "../EMDatasetBase" EMDatasetSpa : acquisition EMDatasetSpa --> "1" Acquisition : acquisition click Acquisition href "../Acquisition" EMDatasetSpa : instrument EMDatasetSpa --> "1" Instrument : instrument click Instrument href "../Instrument" EMDatasetSpa : organizational EMDatasetSpa --> "1" Organizational : organizational click Organizational href "../Organizational" EMDatasetSpa : processing EMDatasetSpa --> "0..1" Processing : processing click Processing href "../Processing" EMDatasetSpa : sample EMDatasetSpa --> "1" Sample : sample click Sample href "../Sample"

Inheritance

EMDatasetBase
- EMDatasetSpa

Slots

Name	Cardinality and Range	Description	Inheritance
processing	0..1 Processing	Processing information on the dataset	direct
acquisition	1 Acquisition	Describe the data acquisition parameters	EMDatasetBase
instrument	1 Instrument	Describe the instrument used to acquire the data	EMDatasetBase
sample	1 Sample	Sample information	EMDatasetBase
organizational	1 Organizational	Information on authors and grants	EMDatasetBase

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/osc-em/oscem-schemas-spa

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/osc-em/oscem-schemas-spa/:EMDatasetSpa
native	https://w3id.org/osc-em/oscem-schemas-spa/:EMDatasetSpa

LinkML Source

Direct

name: EMDatasetSpa
description: Single particle cryo electron microscopy dataset
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
is_a: EMDatasetBase
slots:
- processing
slot_usage:
  acquisition:
    name: acquisition
    description: Describe the data acquisition parameters
    range: Acquisition
    required: true
  instrument:
    name: instrument
    description: Describe the instrument used to acquire the data
    range: Instrument
    required: true
  sample:
    name: sample
    description: Sample information
    range: Sample
    required: true
  organizational:
    name: organizational
    description: Information on authors and grants
    range: Organizational
    required: true
tree_root: true

Induced

name: EMDatasetSpa
description: Single particle cryo electron microscopy dataset
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
is_a: EMDatasetBase
slot_usage:
  acquisition:
    name: acquisition
    description: Describe the data acquisition parameters
    range: Acquisition
    required: true
  instrument:
    name: instrument
    description: Describe the instrument used to acquire the data
    range: Instrument
    required: true
  sample:
    name: sample
    description: Sample information
    range: Sample
    required: true
  organizational:
    name: organizational
    description: Information on authors and grants
    range: Organizational
    required: true
attributes:
  processing:
    name: processing
    description: Processing information on the dataset
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: processing
    owner: EMDatasetSpa
    domain_of:
    - EMDatasetSpa
    range: Processing
    required: false
  acquisition:
    name: acquisition
    description: Describe the data acquisition parameters
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: acquisition
    owner: EMDatasetSpa
    domain_of:
    - EMDatasetBase
    range: Acquisition
    required: true
  instrument:
    name: instrument
    description: Describe the instrument used to acquire the data
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: instrument
    owner: EMDatasetSpa
    domain_of:
    - EMDatasetBase
    range: Instrument
    required: true
  sample:
    name: sample
    description: Sample information
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: sample
    owner: EMDatasetSpa
    domain_of:
    - EMDatasetBase
    range: Sample
    required: true
  organizational:
    name: organizational
    description: Information on authors and grants
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: organizational
    owner: EMDatasetSpa
    domain_of:
    - EMDatasetBase
    range: Organizational
    required: true
tree_root: true