Class: Defocus

Defocus-related metadata

URI: https://w3id.org/osc-em/oscem-schemas-spa/:Defocus

classDiagram class Defocus click Defocus href "../Defocus" Defocus : defocus_histogram Defocus : defocus_micrograph_examples Defocus : output_avg_defocus Defocus --> "0..1" QuantityValue : output_avg_defocus click QuantityValue href "../QuantityValue" Defocus : output_max_defocus Defocus --> "0..1" QuantityValue : output_max_defocus click QuantityValue href "../QuantityValue" Defocus : output_min_defocus Defocus --> "0..1" QuantityValue : output_min_defocus click QuantityValue href "../QuantityValue"

Slots

Name	Cardinality and Range	Description	Inheritance
output_min_defocus	0..1 QuantityValue	Minimum defocus	direct
output_max_defocus	0..1 QuantityValue	Maximum defocus	direct
output_avg_defocus	0..1 QuantityValue	Average value of defocus	direct
defocus_histogram	0..1 String	Filename of the defocus values histogram	direct
defocus_micrograph_examples	0..1 String	Filename of micrographs shown as examples in ascending order of defocus value	direct

Usages

used by	used in	type	used
CTFs	defocus	range	Defocus

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/osc-em/oscem-schemas-spa

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/osc-em/oscem-schemas-spa/:Defocus
native	https://w3id.org/osc-em/oscem-schemas-spa/:Defocus

LinkML Source

Direct

name: Defocus
description: Defocus-related metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slots:
- output_min_defocus
- output_max_defocus
- output_avg_defocus
- defocus_histogram
- defocus_micrograph_examples
slot_usage:
  output_min_defocus:
    name: output_min_defocus
    required: false
  output_max_defocus:
    name: output_max_defocus
    required: false
  output_avg_defocus:
    name: output_avg_defocus
    required: false
  defocus_histogram:
    name: defocus_histogram
    required: false
  defocus_micrograph_examples:
    name: defocus_micrograph_examples
    required: false

Induced

name: Defocus
description: Defocus-related metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slot_usage:
  output_min_defocus:
    name: output_min_defocus
    required: false
  output_max_defocus:
    name: output_max_defocus
    required: false
  output_avg_defocus:
    name: output_avg_defocus
    required: false
  defocus_histogram:
    name: defocus_histogram
    required: false
  defocus_micrograph_examples:
    name: defocus_micrograph_examples
    required: false
attributes:
  output_min_defocus:
    name: output_min_defocus
    description: Minimum defocus
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: output_min_defocus
    owner: Defocus
    domain_of:
    - Defocus
    range: QuantityValue
    required: false
  output_max_defocus:
    name: output_max_defocus
    description: Maximum defocus
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: output_max_defocus
    owner: Defocus
    domain_of:
    - Defocus
    range: QuantityValue
    required: false
  output_avg_defocus:
    name: output_avg_defocus
    description: Average value of defocus
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: output_avg_defocus
    owner: Defocus
    domain_of:
    - Defocus
    range: QuantityValue
    required: false
  defocus_histogram:
    name: defocus_histogram
    description: Filename of the defocus values histogram
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: defocus_histogram
    owner: Defocus
    domain_of:
    - Defocus
    range: string
    required: false
  defocus_micrograph_examples:
    name: defocus_micrograph_examples
    description: Filename of micrographs shown as examples in ascending order of defocus
      value
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: defocus_micrograph_examples
    owner: Defocus
    domain_of:
    - Defocus
    range: string
    required: false