Skip to content

Class: Coordinates

Class representing coordinates metadata

URI: https://w3id.org/osc-em/oscem-schemas-spa/:Coordinates

classDiagram class Coordinates click Coordinates href "../Coordinates" Coordinates : descriptors Coordinates --> "*" Descriptors : descriptors click Descriptors href "../Descriptors" Coordinates : micrograph_examples Coordinates : num_source_micrographs Coordinates : number_particles Coordinates : particles_histogram Coordinates : particles_per_micrograph

Slots

Name Cardinality and Range Description Inheritance
number_particles 1
Integer		 Total number of particles direct
particles_per_micrograph 0..1
Float		 Mean number of particles per micrograph direct
num_source_micrographs 0..1
Integer		 Total number of micrographs from which coordinates come from direct
particles_histogram 0..1
String		 Filename of histogram for particle number per micrograph direct
micrograph_examples 0..1
String		 Filename of micrographs shown as examples in descending order based on the nu... direct
descriptors *
Descriptors		 List of custom descriptors for user-defined key-value pairs describing how mo... direct

Usages

used by used in type used
Processing coordinates range Coordinates

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/osc-em/oscem-schemas-spa

Mappings

Mapping Type Mapped Value
self https://w3id.org/osc-em/oscem-schemas-spa/:Coordinates
native https://w3id.org/osc-em/oscem-schemas-spa/:Coordinates

LinkML Source

Direct

name: Coordinates
description: Class representing coordinates metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slots:
- number_particles
- particles_per_micrograph
- num_source_micrographs
- particles_histogram
- micrograph_examples
- descriptors
slot_usage:
  number_particles:
    name: number_particles
    required: true
  particles_per_micrograph:
    name: particles_per_micrograph
    required: false
  num_source_micrographs:
    name: num_source_micrographs
    required: false
  particles_histogram:
    name: particles_histogram
    required: false
  micrograph_examples:
    name: micrograph_examples
    required: false
  descriptors:
    name: descriptors
    required: false

Induced

name: Coordinates
description: Class representing coordinates metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slot_usage:
  number_particles:
    name: number_particles
    required: true
  particles_per_micrograph:
    name: particles_per_micrograph
    required: false
  num_source_micrographs:
    name: num_source_micrographs
    required: false
  particles_histogram:
    name: particles_histogram
    required: false
  micrograph_examples:
    name: micrograph_examples
    required: false
  descriptors:
    name: descriptors
    required: false
attributes:
  number_particles:
    name: number_particles
    description: Total number of particles
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: number_particles
    owner: Coordinates
    domain_of:
    - Coordinates
    range: integer
    required: true
  particles_per_micrograph:
    name: particles_per_micrograph
    description: Mean number of particles per micrograph
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: particles_per_micrograph
    owner: Coordinates
    domain_of:
    - Coordinates
    range: float
    required: false
  num_source_micrographs:
    name: num_source_micrographs
    description: Total number of micrographs from which coordinates come from
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: num_source_micrographs
    owner: Coordinates
    domain_of:
    - Coordinates
    range: integer
    required: false
  particles_histogram:
    name: particles_histogram
    description: Filename of histogram for particle number per micrograph
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: particles_histogram
    owner: Coordinates
    domain_of:
    - Coordinates
    range: string
    required: false
  micrograph_examples:
    name: micrograph_examples
    description: Filename of micrographs shown as examples in descending order based
      on the number of particles
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: micrograph_examples
    owner: Coordinates
    domain_of:
    - Coordinates
    range: string
    required: false
  descriptors:
    name: descriptors
    description: List of custom descriptors for user-defined key-value pairs describing
      how movies were obtained or any related information
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: descriptors
    owner: Coordinates
    domain_of:
    - Movies
    - Micrographs
    - CTFs
    - Coordinates
    - Classes2D
    - Classes3D
    - Volumes
    range: Descriptors
    required: false
    multivalued: true