Class: Classes3D

Class representing classes 3D metadata

URI: https://w3id.org/osc-em/oscem-schemas-spa/:Classes3D

erDiagram Classes3D { integerList particles_per_3Dclass string images_classes_3D } Descriptors { string descriptor_name } Any { } QuantityValue { string unit float value } Volume { } IsosurfaceImages { string front_view string side_view string top_view } OrthogonalSlices { string orthogonal_slices_X string orthogonal_slices_Y string orthogonal_slices_Z } Classes3D ||--}o Volume : "volume" Classes3D ||--|o QuantityValue : "resolution_classes_3D" Classes3D ||--}o Descriptors : "descriptors" Descriptors ||--|o Any : "descriptor_thing" Volume ||--|o OrthogonalSlices : "orthogonal_slices" Volume ||--|o IsosurfaceImages : "isosurface_images"

Slots

Name	Cardinality and Range	Description	Inheritance
particles_per_3Dclass	* Integer	Number of particles per 3D class	direct
images_classes_3D	0..1 String	Filename of the image containing 3D class images	direct
volume	* Volume	Describes volume(s) obtained	direct
resolution_classes_3D	0..1 QuantityValue	Resolution of volume	direct
descriptors	* Descriptors	List of custom descriptors for user-defined key-value pairs describing how mo...	direct

Usages

used by	used in	type	used
Processing	classes3D	range	Classes3D

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/osc-em/oscem-schemas-spa

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/osc-em/oscem-schemas-spa/:Classes3D
native	https://w3id.org/osc-em/oscem-schemas-spa/:Classes3D

LinkML Source

Direct

name: Classes3D
description: Class representing classes 3D metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slots:
- particles_per_3Dclass
- images_classes_3D
- volume
- resolution_classes_3D
- descriptors
slot_usage:
  particles_per_3Dclass:
    name: particles_per_3Dclass
    required: false
  images_classes_3D:
    name: images_classes_3D
    required: false
  volume:
    name: volume
    required: false
  resolution_classes_3D:
    name: resolution_classes_3D
    required: false
  descriptors:
    name: descriptors
    required: false

Induced

name: Classes3D
description: Class representing classes 3D metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slot_usage:
  particles_per_3Dclass:
    name: particles_per_3Dclass
    required: false
  images_classes_3D:
    name: images_classes_3D
    required: false
  volume:
    name: volume
    required: false
  resolution_classes_3D:
    name: resolution_classes_3D
    required: false
  descriptors:
    name: descriptors
    required: false
attributes:
  particles_per_3Dclass:
    name: particles_per_3Dclass
    description: Number of particles per 3D class
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: particles_per_3Dclass
    owner: Classes3D
    domain_of:
    - Classes3D
    range: integer
    required: false
    multivalued: true
  images_classes_3D:
    name: images_classes_3D
    description: Filename of the image containing 3D class images
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: images_classes_3D
    owner: Classes3D
    domain_of:
    - Classes3D
    range: string
    required: false
  volume:
    name: volume
    description: Describes volume(s) obtained
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: volume
    owner: Classes3D
    domain_of:
    - Classes3D
    range: Volume
    required: false
    multivalued: true
  resolution_classes_3D:
    name: resolution_classes_3D
    description: Resolution of volume
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: resolution_classes_3D
    owner: Classes3D
    domain_of:
    - Classes3D
    range: QuantityValue
    required: false
  descriptors:
    name: descriptors
    description: List of custom descriptors for user-defined key-value pairs describing
      how movies were obtained or any related information
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: descriptors
    owner: Classes3D
    domain_of:
    - Movies
    - Micrographs
    - CTFs
    - Coordinates
    - Classes2D
    - Classes3D
    - Volumes
    range: Descriptors
    required: false
    multivalued: true