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Class: CTFs

Class representing Contrast Transfer Function (CTF) metadata

URI: https://w3id.org/osc-em/oscem-schemas-spa/:CTFs

erDiagram CTFs { float amplitude_contrast } Descriptors { string descriptor_name } Any { } Astigmatism { string astigmatism_histogram } Resolution { string resolution_histogram } QuantityValue { string unit float value } Defocus { string defocus_histogram string defocus_micrograph_examples } CTFs ||--|o Defocus : "defocus" CTFs ||--|o Resolution : "resolution" CTFs ||--|o Astigmatism : "astigmatism" CTFs ||--}o Descriptors : "descriptors" Descriptors ||--|o Any : "descriptor_thing" Resolution ||--|o QuantityValue : "output_min_resolution" Resolution ||--|o QuantityValue : "output_max_resolution" Resolution ||--|o QuantityValue : "output_avg_resolution" Defocus ||--|o QuantityValue : "output_min_defocus" Defocus ||--|o QuantityValue : "output_max_defocus" Defocus ||--|o QuantityValue : "output_avg_defocus"

Slots

Name Cardinality and Range Description Inheritance
amplitude_contrast 0..1
Float		 Amplitude contrast direct
defocus 0..1
Defocus		 Defocus metadata direct
resolution 0..1
Resolution		 Resolution metadata direct
astigmatism 0..1
Astigmatism		 Astigmatism metadata direct
descriptors *
Descriptors		 List of custom descriptors for user-defined key-value pairs describing how mo... direct

Usages

used by used in type used
Processing ctfs range CTFs

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/osc-em/oscem-schemas-spa

Mappings

Mapping Type Mapped Value
self https://w3id.org/osc-em/oscem-schemas-spa/:CTFs
native https://w3id.org/osc-em/oscem-schemas-spa/:CTFs

LinkML Source

Direct

name: CTFs
description: Class representing Contrast Transfer Function (CTF) metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slots:
- amplitude_contrast
- defocus
- resolution
- astigmatism
- descriptors
slot_usage:
  amplitude_contrast:
    name: amplitude_contrast
    required: false
  defocus:
    name: defocus
    required: false
  resolution:
    name: resolution
    required: false
  astigmatism:
    name: astigmatism
    required: false
  descriptors:
    name: descriptors
    required: false

Induced

name: CTFs
description: Class representing Contrast Transfer Function (CTF) metadata
from_schema: https://w3id.org/osc-em/oscem-schemas-spa
slot_usage:
  amplitude_contrast:
    name: amplitude_contrast
    required: false
  defocus:
    name: defocus
    required: false
  resolution:
    name: resolution
    required: false
  astigmatism:
    name: astigmatism
    required: false
  descriptors:
    name: descriptors
    required: false
attributes:
  amplitude_contrast:
    name: amplitude_contrast
    description: Amplitude contrast
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: amplitude_contrast
    owner: CTFs
    domain_of:
    - CTFs
    range: float
    required: false
  defocus:
    name: defocus
    description: Defocus metadata
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: defocus
    owner: CTFs
    domain_of:
    - CTFs
    range: Defocus
    required: false
  resolution:
    name: resolution
    description: Resolution metadata
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: resolution
    owner: CTFs
    domain_of:
    - CTFs
    range: Resolution
    required: false
  astigmatism:
    name: astigmatism
    description: Astigmatism metadata
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: astigmatism
    owner: CTFs
    domain_of:
    - CTFs
    range: Astigmatism
    required: false
  descriptors:
    name: descriptors
    description: List of custom descriptors for user-defined key-value pairs describing
      how movies were obtained or any related information
    from_schema: https://w3id.org/osc-em/oscem-schemas-spa
    rank: 1000
    alias: descriptors
    owner: CTFs
    domain_of:
    - Movies
    - Micrographs
    - CTFs
    - Coordinates
    - Classes2D
    - Classes3D
    - Volumes
    range: Descriptors
    required: false
    multivalued: true