| acceleration_voltage |
Voltage used for the electron acceleration, in kV |
| acquisition |
|
| amplitude_contrast |
Amplitude contrast |
| assembly |
What type of higher order structure your sample forms - if any |
| astigmatism |
Astigmatism metadata |
| astigmatism_histogram |
Filename of the astigmatism values histogram |
| authors |
List of authors associated with the project |
| beamshift |
Movement of the beam above the sample for data collection purposes that does ... |
| beamtilt |
Another way to move the beam above the sample for data collection purposes th... |
| beamtiltgroups |
Number of Beamtilt groups present in this dataset - for optimized processing ... |
| binning_camera |
Level of binning on the images applied during data collection |
| budget |
budget |
| buffer |
Name/composition of the (chemical) sample buffer during grid preparation |
| c2_aperture |
C2 aperture size used in data acquisition, in µm |
| calibrated_defocus |
Machine estimated defocus, min and max values in µm |
| calibrated_magnification |
Calculated magnification, no unit |
| chromatic_aberration_corrector |
Specialist device to correct for chromatic aberration of the microscope lense... |
| classes2D |
Classes 2D metadata |
| classes3D |
Classes 3D metadata |
| concentration |
Concentration of the (supra)molecule in the sample, in mg/ml |
| coordinates |
Coordinates metadata |
| country |
Country of the institution |
| cryogen |
Cryogen used in cooling the instrument and sample, usually nitrogen |
| cs |
Spherical aberration of the instrument, in mm |
| ctfs |
CTFs metadata |
| dark_image |
Dark image filename |
| date_time |
Time and date of the data acquisition |
| defocus |
Defocus metadata |
| defocus_histogram |
Filename of the defocus values histogram |
| defocus_micrograph_examples |
Filename of micrographs shown as examples in ascending order of defocus value |
| descriptor_name |
Name defining the descriptor |
| descriptor_thing |
Description of the descriptor |
| descriptors |
List of custom descriptors for user-defined key-value pairs describing how mo... |
| detector |
Make and model of the detector used |
| detector_mode |
Operating mode of the detector |
| dose_per_image |
Dose per image |
| dose_per_movie |
Average dose per image/movie/tilt - given in electrons per square Angstrom |
| electron_source |
Type of electron source used in the microscope, such as FEG |
| email |
email |
| embedding |
Whether the sample was embedded |
| end_date |
end date |
| energy_filter |
Wether an energy filter was used and its specifics |
| exposure_time |
Time of data acquisition per movie/tilt - in s |
| expression_system |
Scientific name of the organism used to produce the molecule of interest |
| film_material |
Type of material the support film is made of |
| film_support |
Whether a support film was used |
| film_thickness |
Thickness of the support film |
| film_topology |
Topology of the support film |
| first_name |
first name |
| frames_per_movie |
Number of frames that on average constitute a full movie, can be a bit hard t... |
| front_view |
Filename of the front view isosurface image |
| funder |
funding organization/person |
| funder_name |
funding organization/person |
| gain_image |
Gain image filename |
| gainref_flip_rotate |
Whether and how you have to flip or rotate the gainref in order to align with... |
| gene_name |
Name of the gene of interest |
| grant_name |
name of the grant |
| grants |
List of grants associated with the project |
| grid |
Description of the grid used |
| grids_imaged |
Number of grids imaged for this project - here with qualifier during this dat... |
| height |
The height of a given item - unit depends on item |
| holder |
Speciman holder model |
| holder_cryogen |
Type of cryogen used in the holder - if the holder is cooled seperately |
| humidity |
Environmental humidity just before vitrification, in % |
| illumination |
Mode of illumination used during data collection |
| image_size |
The size of the image in pixels, height and width given |
| images_classes_2D |
Filename of the image containing 2D class images |
| images_classes_3D |
Filename of the image containing 3D class images |
| images_generated |
Number of images generated total for this data collection - might need a qual... |
| imageshift |
Movement of the Beam below the image in order to shift the image on the detec... |
| imaging |
Mode of imaging used during data collection |
| increment |
Increment between elements of a series |
| initial_dose |
Initial dose |
| instrument |
|
| instrument_type |
Details of a given specialist instrument |
| isosurface_images |
isosurface images of volume |
| ligands |
List of ligands associated with the sample |
| manufacturer |
Grid manufacturer |
| material |
Material out of which the grid is made |
| maximal |
Maximal value of a given dataset property |
| mesh |
Grid mesh in lines per inch |
| micrograph_examples |
Filename of micrographs shown as examples in descending order based on the nu... |
| micrographs |
Micrographs metadata |
| microscope |
Name/Type of the Microscope |
| microscope_software |
Software used for instrument control, |
| minimal |
Minimal value of a given dataset property |
| model |
Make and model of a specilized device |
| molecular_class |
Class of the molecule |
| molecular_overall_type |
Description of the overall molecular type, i |
| molecular_type |
Description of the overall molecular type, i |
| molecular_weight |
Molecular weight in Da |
| molecule |
List of molecule associated with the sample |
| movies |
Movies metadata |
| name |
name |
| name_mol |
Name of an individual molecule (often protein) in the sample |
| name_org |
Name of the organization |
| name_sample |
Name of the full sample |
| natural_source |
Scientific name of the natural host organism |
| nominal_defocus |
Target defocus set, min and max values in µm |
| nominal_magnification |
Magnification level as indicated by the instrument, no unit |
| num_source_micrographs |
Total number of micrographs from which coordinates come from |
| number_micrographs |
Number of micrographs |
| number_particles |
Total number of particles |
| orcid |
ORCID of the author, a type of unique identifier |
| organizational |
|
| orthogonal_slices |
orthogonal slices of volume |
| orthogonal_slices_X |
Filename of orthogonal slices in X direction |
| orthogonal_slices_Y |
Filename of orthogonal slices in Y direction |
| orthogonal_slices_Z |
Filename of orthogonal slices in Z direction |
| output_avg_defocus |
Average value of defocus |
| output_avg_resolution |
Average value of resolution |
| output_max_defocus |
Maximum defocus |
| output_max_resolution |
Maximum resolution |
| output_min_defocus |
Minimum defocus |
| output_min_resolution |
Minimum resolution |
| overall_molecule |
Description of the overall molecule |
| particles_histogram |
Filename of histogram for particle number per micrograph |
| particles_per_2Dclass |
Number of particles per 2D class |
| particles_per_3Dclass |
Number of particles per 3D class |
| particles_per_micrograph |
Mean number of particles per micrograph |
| person |
person |
| ph |
pH of the sample buffer |
| phaseplate |
Phaseplate is a special optics device that can be used to enhance contrast |
| pixel_size |
Pixel size, in Angstrom |
| present |
Whether the model contains any ligands |
| pretreatment_atmosphere |
Atmospheric conditions in the chamber during pretreatment, i |
| pretreatment_pressure |
Pressure of the chamber during pretreatment, in Pa |
| pretreatment_time |
Length of time of the pretreatment in s |
| pretreatment_type |
Type of pretreatment of the grid, i |
| processing |
Processing information on the dataset |
| project_id |
project id |
| reference |
Link to a reference of your ligand, i |
| resolution |
Resolution metadata |
| resolution_classes_2D |
Resolution of classes 2D |
| resolution_classes_3D |
Resolution of volume |
| resolution_histogram |
Filename of the resolution values histogram |
| role |
Role of the author, for example principal investigator |
| sample |
|
| sequence |
Full sequence of the sample as in the data, i |
| shadowing |
Whether the sample was shadowed |
| side_view |
Filename of the side view isosurface image |
| size |
Size of the volume |
| smiles |
Provide a valid SMILES string of your ligand |
| source |
Where the sample was taken from, i |
| specialist_optics |
Any type of special optics, such as a phaseplate |
| specimen |
Description of the specimen |
| spherical_aberration_corrector |
Specialist device to correct for spherical aberration of the microscope lense... |
| staining |
Whether the sample was stained |
| start_date |
start date |
| taxonomy_id_expression |
Taxonomy ID of the expression system organism |
| taxonomy_id_source |
Taxonomy ID of the natural source organism |
| temperature |
Environmental temperature just before vitrification, in K |
| temperature_range |
Temperature during data collection, in K with min and max values |
| top_view |
Filename of the top view isosurface image |
| type_org |
Type of organization, academic, commercial, governmental, etc |
| unit |
the unit of a given value |
| used |
whether a specific instrument was used during data acquisition |
| value |
the value of a field with a unit |
| vitrification |
Whether the sample was vitrified |
| vitrification_cryogen |
Which cryogen was used for vitrification |
| vol_number_particles |
Number of particles associated to volume |
| vol_resolution |
Resolution of volume |
| volume |
Describes volume(s) obtained |
| volume_type |
Indicates the type of volume |
| volumes |
Volume metadata |
| width |
The width of a given item - unit depends on item |
| width_energy_filter |
Width of the energy filter used |
| work_phone |
work phone |
| work_status |
work status |
| x_max |
maximum x |
| x_min |
minimum x |
| y_max |
maximum y |
| y_min |
minimum y |