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Class: Thinning

how the frozen sample was thinned by i.e. FiB-milling

URI: https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:Thinning

erDiagram Thinning { string method_thin string instrument_thin string ion_source boolean lift_out } QuantitySI { float valueSI string unitSI string unit float value } Thinning ||--|o QuantitySI : "target_thickness"

Slots

Name Cardinality and Range Description Inheritance
method_thin 0..1
String		 The thinning method used, such as FIB milling direct
instrument_thin 0..1
String		 Instrument used for thinning the sample direct
ion_source 0..1
String		 what ion source was used? direct
target_thickness 0..1
QuantitySI		 What was the target thickness of the lamella; in nm direct
lift_out 0..1
Boolean		 whether a lift out was performed direct

Usages

used by used in type used
SampleEnv thinning range Thinning
SampleCell thinning range Thinning

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo

Mappings

Mapping Type Mapped Value
self https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:Thinning
native https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:Thinning

LinkML Source

Direct

name: Thinning
description: how the frozen sample was thinned by i.e. FiB-milling
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
slots:
- method_thin
- instrument_thin
- ion_source
- target_thickness
- lift_out

Induced

name: Thinning
description: how the frozen sample was thinned by i.e. FiB-milling
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
attributes:
  method_thin:
    name: method_thin
    description: The thinning method used, such as FIB milling.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: method_thin
    owner: Thinning
    domain_of:
    - Thinning
    range: string
  instrument_thin:
    name: instrument_thin
    description: Instrument used for thinning the sample
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: instrument_thin
    owner: Thinning
    domain_of:
    - Thinning
    range: string
  ion_source:
    name: ion_source
    description: what ion source was used?
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: ion_source
    owner: Thinning
    domain_of:
    - Thinning
    range: string
  target_thickness:
    name: target_thickness
    description: What was the target thickness of the lamella; in nm.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: target_thickness
    owner: Thinning
    domain_of:
    - Thinning
    range: QuantitySI
  lift_out:
    name: lift_out
    description: whether a lift out was performed
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: lift_out
    owner: Thinning
    domain_of:
    - Thinning
    range: boolean