Class: Thinning

how the frozen sample was thinned by i.e. FiB-milling

URI: https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:Thinning

classDiagram class Thinning click Thinning href "../Thinning" Thinning : instrument_thin Thinning : ion_source Thinning : lift_out Thinning : method_thin Thinning : target_thickness Thinning --> "0..1" QuantityValue : target_thickness click QuantityValue href "../QuantityValue"

Slots

Name	Cardinality and Range	Description	Inheritance
method_thin	0..1 String	The thinning method used, such as FIB milling	direct
instrument_thin	0..1 String	Instrument used for thinning the sample	direct
ion_source	0..1 String	what ion source was used?	direct
target_thickness	0..1 QuantityValue	What was the target thickness of the lamella; in nm	direct
lift_out	0..1 Boolean	whether a lift out was performed	direct

Usages

used by	used in	type	used
SampleEnv	thinning	range	Thinning
SampleCell	thinning	range	Thinning

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:Thinning
native	https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:Thinning

LinkML Source

Direct

name: Thinning
description: how the frozen sample was thinned by i.e. FiB-milling
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
slots:
- method_thin
- instrument_thin
- ion_source
- target_thickness
- lift_out

Induced

name: Thinning
description: how the frozen sample was thinned by i.e. FiB-milling
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
attributes:
  method_thin:
    name: method_thin
    description: The thinning method used, such as FIB milling.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: method_thin
    owner: Thinning
    domain_of:
    - Thinning
    range: string
  instrument_thin:
    name: instrument_thin
    description: Instrument used for thinning the sample
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: instrument_thin
    owner: Thinning
    domain_of:
    - Thinning
    range: string
  ion_source:
    name: ion_source
    description: what ion source was used?
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: ion_source
    owner: Thinning
    domain_of:
    - Thinning
    range: string
  target_thickness:
    name: target_thickness
    description: What was the target thickness of the lamella; in nm.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: target_thickness
    owner: Thinning
    domain_of:
    - Thinning
    range: QuantityValue
  lift_out:
    name: lift_out
    description: whether a lift out was performed
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: lift_out
    owner: Thinning
    domain_of:
    - Thinning
    range: boolean