Class: SampleEnv
Unifying class to describe the full sample.
URI: https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:SampleEnv
erDiagram
SampleEnv {
}
TomogramFeatures {
string cellular_features
stringList organelles
string main_target
string details_tomo
}
Thinning {
string method_thin
string instrument_thin
string ion_source
boolean lift_out
}
QuantitySI {
float valueSI
string unitSI
string unit
float value
}
Freezing {
string cryogen_sample_env
FreezingMethodEnum method
boolean blotting
string atmosphere
string details
}
SpecimenEnv {
stringList organism
string tissue
string source_env
string location
date collection_date
string handling
}
SampleEnv ||--|| SpecimenEnv : "specimen_env"
SampleEnv ||--|o Freezing : "freezing"
SampleEnv ||--|o Thinning : "thinning"
SampleEnv ||--|o TomogramFeatures : "tomogram_features"
Thinning ||--|o QuantitySI : "target_thickness"
Freezing ||--|o QuantitySI : "humidity_env"
Freezing ||--|o QuantitySI : "temperature_env"
Inheritance
- SampleEnv
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
specimen_env | 1 SpecimenEnv |
direct | |
freezing | 0..1 Freezing |
direct | |
thinning | 0..1 Thinning |
direct | |
tomogram_features | 0..1 TomogramFeatures |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
Mappings
Mapping Type | Mapped Value |
---|---|
self | https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:SampleEnv |
native | https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:SampleEnv |
LinkML Source
Direct
name: SampleEnv
description: Unifying class to describe the full sample.
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
slots:
- specimen_env
- freezing
- thinning
- tomogram_features
slot_usage:
specimen_env:
name: specimen_env
required: true
Induced
name: SampleEnv
description: Unifying class to describe the full sample.
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
slot_usage:
specimen_env:
name: specimen_env
required: true
attributes:
specimen_env:
name: specimen_env
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
rank: 1000
alias: specimen_env
owner: SampleEnv
domain_of:
- SampleEnv
range: SpecimenEnv
required: true
freezing:
name: freezing
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
rank: 1000
alias: freezing
owner: SampleEnv
domain_of:
- SampleEnv
range: Freezing
thinning:
name: thinning
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
rank: 1000
alias: thinning
owner: SampleEnv
domain_of:
- SampleEnv
range: Thinning
tomogram_features:
name: tomogram_features
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
rank: 1000
alias: tomogram_features
owner: SampleEnv
domain_of:
- SampleEnv
range: TomogramFeatures