Class: SampleCell

Unifying class to describe the full sample with growth conditions

URI: https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:SampleCell

erDiagram SampleCell { } TomogramFeatures { string cellular_features stringList organelles string main_target string details_tomo } Thinning { string method_thin string instrument_thin string ion_source boolean lift_out } QuantitySI { float valueSI string unitSI string unit float value } Freezing { string cryogen_sample_env FreezingMethodEnum method boolean blotting string atmosphere string details } SpecimenEnv { stringList organism string tissue string source_env string location date collection_date string handling } GrowthCondition { string media string growth_location string cell_cycle string treatment string atmosphere_growth } SampleCell ||--|o GrowthCondition : "growth_condition" SampleCell ||--|| SpecimenEnv : "specimen_env" SampleCell ||--|o Freezing : "freezing" SampleCell ||--|o Thinning : "thinning" SampleCell ||--|o TomogramFeatures : "tomogram_features" Thinning ||--|o QuantitySI : "target_thickness" Freezing ||--|o QuantitySI : "humidity_env" Freezing ||--|o QuantitySI : "temperature_env" GrowthCondition ||--|o QuantitySI : "temperature_growth"

Inheritance

SampleEnv
- SampleCell

Slots

Name	Cardinality and Range	Description	Inheritance
growth_condition	0..1 GrowthCondition	how the specimen was grown	direct
specimen_env	1 SpecimenEnv		SampleEnv
freezing	0..1 Freezing		SampleEnv
thinning	0..1 Thinning		SampleEnv
tomogram_features	0..1 TomogramFeatures		SampleEnv

Usages

used by	used in	type	used
EMDatasetCell	sample	range	SampleCell

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:SampleCell
native	https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:SampleCell

LinkML Source

Direct

name: SampleCell
description: Unifying class to describe the full sample with growth conditions
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
is_a: SampleEnv
slots:
- growth_condition

Induced

name: SampleCell
description: Unifying class to describe the full sample with growth conditions
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
is_a: SampleEnv
attributes:
  growth_condition:
    name: growth_condition
    description: how the specimen was grown
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: growth_condition
    owner: SampleCell
    domain_of:
    - SampleCell
    range: GrowthCondition
  specimen_env:
    name: specimen_env
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: specimen_env
    owner: SampleCell
    domain_of:
    - SampleEnv
    range: SpecimenEnv
    required: true
  freezing:
    name: freezing
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: freezing
    owner: SampleCell
    domain_of:
    - SampleEnv
    range: Freezing
  thinning:
    name: thinning
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: thinning
    owner: SampleCell
    domain_of:
    - SampleEnv
    range: Thinning
  tomogram_features:
    name: tomogram_features
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: tomogram_features
    owner: SampleCell
    domain_of:
    - SampleEnv
    range: TomogramFeatures