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Class: SampleCell

Unifying class to describe the full sample with growth conditions

URI: https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:SampleCell

classDiagram class SampleCell click SampleCell href "../SampleCell" SampleEnv <|-- SampleCell click SampleEnv href "../SampleEnv" SampleCell : freezing SampleCell --> "0..1" Freezing : freezing click Freezing href "../Freezing" SampleCell : growth_condition SampleCell --> "0..1" GrowthCondition : growth_condition click GrowthCondition href "../GrowthCondition" SampleCell : specimen_env SampleCell --> "1" SpecimenEnv : specimen_env click SpecimenEnv href "../SpecimenEnv" SampleCell : thinning SampleCell --> "0..1" Thinning : thinning click Thinning href "../Thinning" SampleCell : tomogram_features SampleCell --> "0..1" TomogramFeatures : tomogram_features click TomogramFeatures href "../TomogramFeatures"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
growth_condition 0..1
GrowthCondition		 how the specimen was grown direct
specimen_env 1
SpecimenEnv		 SampleEnv
freezing 0..1
Freezing		 SampleEnv
thinning 0..1
Thinning		 SampleEnv
tomogram_features 0..1
TomogramFeatures		 SampleEnv

Usages

used by used in type used
EMDatasetCell sample range SampleCell

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo

Mappings

Mapping Type Mapped Value
self https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:SampleCell
native https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:SampleCell

LinkML Source

Direct

name: SampleCell
description: Unifying class to describe the full sample with growth conditions
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
is_a: SampleEnv
slots:
- growth_condition

Induced

name: SampleCell
description: Unifying class to describe the full sample with growth conditions
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
is_a: SampleEnv
attributes:
  growth_condition:
    name: growth_condition
    description: how the specimen was grown
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: growth_condition
    owner: SampleCell
    domain_of:
    - SampleCell
    range: GrowthCondition
  specimen_env:
    name: specimen_env
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: specimen_env
    owner: SampleCell
    domain_of:
    - SampleEnv
    range: SpecimenEnv
    required: true
  freezing:
    name: freezing
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: freezing
    owner: SampleCell
    domain_of:
    - SampleEnv
    range: Freezing
  thinning:
    name: thinning
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: thinning
    owner: SampleCell
    domain_of:
    - SampleEnv
    range: Thinning
  tomogram_features:
    name: tomogram_features
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: tomogram_features
    owner: SampleCell
    domain_of:
    - SampleEnv
    range: TomogramFeatures