Skip to content

Class: GrowthCondition

how the cells were grown

URI: https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:GrowthCondition

classDiagram class GrowthCondition click GrowthCondition href "../GrowthCondition" GrowthCondition : atmosphere_growth GrowthCondition : cell_cycle GrowthCondition : growth_location GrowthCondition : media GrowthCondition : temperature_growth GrowthCondition --> "0..1" QuantityValue : temperature_growth click QuantityValue href "../QuantityValue" GrowthCondition : treatment

Slots

Name Cardinality and Range Description Inheritance
media 0..1
String		 What growth media was used direct
growth_location 0..1
String		 In/on what kind of surface/container the cells were grown; i direct
cell_cycle 0..1
String		 What was the targeted cell cycle state, if any direct
treatment 0..1
String		 were there any special treatment conditions; such as addition of certain chem... direct
atmosphere_growth 0..1
String		 What was the atmosphere the sample was in, elaborate on any special gases pre... direct
temperature_growth 0..1
QuantityValue		 temperature of the sample; in K direct

Usages

used by used in type used
SampleCell growth_condition range GrowthCondition

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo

Mappings

Mapping Type Mapped Value
self https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:GrowthCondition
native https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:GrowthCondition

LinkML Source

Direct

name: GrowthCondition
description: how the cells were grown
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
slots:
- media
- growth_location
- cell_cycle
- treatment
- atmosphere_growth
- temperature_growth

Induced

name: GrowthCondition
description: how the cells were grown
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
attributes:
  media:
    name: media
    description: What growth media was used
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: media
    owner: GrowthCondition
    domain_of:
    - GrowthCondition
    range: string
  growth_location:
    name: growth_location
    description: In/on what kind of surface/container the cells were grown; i.e. directly
      on a grid
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: growth_location
    owner: GrowthCondition
    domain_of:
    - GrowthCondition
    range: string
  cell_cycle:
    name: cell_cycle
    description: What was the targeted cell cycle state, if any
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: cell_cycle
    owner: GrowthCondition
    domain_of:
    - GrowthCondition
    range: string
  treatment:
    name: treatment
    description: were there any special treatment conditions; such as addition of
      certain chemicals etc
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: treatment
    owner: GrowthCondition
    domain_of:
    - GrowthCondition
    range: string
  atmosphere_growth:
    name: atmosphere_growth
    description: What was the atmosphere the sample was in, elaborate on any special
      gases present etc.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: atmosphere_growth
    owner: GrowthCondition
    domain_of:
    - GrowthCondition
    range: string
  temperature_growth:
    name: temperature_growth
    description: temperature of the sample; in K.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: temperature_growth
    owner: GrowthCondition
    domain_of:
    - GrowthCondition
    range: QuantityValue