Class: Freezing

how the sample was frozen.

URI: https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:Freezing

classDiagram class Freezing click Freezing href "../Freezing" Freezing : atmosphere Freezing : blotting Freezing : cryogen_sample_env Freezing : details Freezing : humidity_env Freezing --> "0..1" QuantityValue : humidity_env click QuantityValue href "../QuantityValue" Freezing : method Freezing --> "0..1" FreezingMethodEnum : method click FreezingMethodEnum href "../FreezingMethodEnum" Freezing : temperature_env Freezing --> "0..1" QuantityValue : temperature_env click QuantityValue href "../QuantityValue"

Slots

Name	Cardinality and Range	Description	Inheritance
cryogen_sample_env	0..1 String	the cryogen used to freeze the sample, i	direct
method	0..1 FreezingMethodEnum	freezing method - such as plunge freezing, high pressure freezing etc	direct
blotting	0..1 Boolean	whether blotting was performed	direct
humidity_env	0..1 QuantityValue	humidity of the atmosphere right before/ during freezing; in %	direct
temperature_env	0..1 QuantityValue	temperature of the sample right before freezing; in K	direct
atmosphere	0..1 String	What was the atmosphere the sample was in right before freezing, elaborate on...	direct
details	0..1 String	Any further comments on the freezing process go here	direct

Usages

used by	used in	type	used
SampleEnv	freezing	range	Freezing
SampleCell	freezing	range	Freezing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:Freezing
native	https://w3id.org/osc-em/oscem-schemas-cellular-tomo/:Freezing

LinkML Source

Direct

name: Freezing
description: how the sample was frozen.
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
slots:
- cryogen_sample_env
- method
- blotting
- humidity_env
- temperature_env
- atmosphere
- details

Induced

name: Freezing
description: how the sample was frozen.
from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
attributes:
  cryogen_sample_env:
    name: cryogen_sample_env
    description: the cryogen used to freeze the sample, i.e. ethane
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: cryogen_sample_env
    owner: Freezing
    domain_of:
    - Freezing
    range: string
  method:
    name: method
    description: freezing method - such as plunge freezing, high pressure freezing
      etc.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: method
    owner: Freezing
    domain_of:
    - Freezing
    range: FreezingMethodEnum
  blotting:
    name: blotting
    description: whether blotting was performed.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: blotting
    owner: Freezing
    domain_of:
    - Freezing
    range: boolean
  humidity_env:
    name: humidity_env
    description: humidity of the atmosphere right before/ during freezing; in %.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: humidity_env
    owner: Freezing
    domain_of:
    - Freezing
    range: QuantityValue
  temperature_env:
    name: temperature_env
    description: temperature of the sample right before freezing; in K.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: temperature_env
    owner: Freezing
    domain_of:
    - Freezing
    range: QuantityValue
  atmosphere:
    name: atmosphere
    description: What was the atmosphere the sample was in right before freezing,
      elaborate on any special gases present etc.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: atmosphere
    owner: Freezing
    domain_of:
    - Freezing
    range: string
  details:
    name: details
    description: Any further comments on the freezing process go here.
    from_schema: https://w3id.org/osc-em/oscem-schemas-cellular-tomo
    rank: 1000
    alias: details
    owner: Freezing
    domain_of:
    - Freezing
    range: string