| acceleration_voltage |
Voltage used for the electron acceleration, in kV |
| acquisition |
|
| atmosphere |
What was the atmosphere the sample was in right before freezing, elaborate on... |
| atmosphere_growth |
What was the atmosphere the sample was in, elaborate on any special gases pre... |
| authors |
List of authors associated with the project |
| beam_convergence |
Refers to how tightly or widely the electron beam is focused onto the sample,... |
| beamshift |
Movement of the beam above the sample for data collection purposes that does ... |
| beamtilt |
Another way to move the beam above the sample for data collection purposes th... |
| beamtiltgroups |
Number of Beamtilt groups present in this dataset - for optimized processing ... |
| binning_camera |
Level of binning on the images applied during data collection |
| blotting |
whether blotting was performed |
| budget |
budget |
| c2_aperture |
C2 aperture size used in data acquisition, in µm |
| calibrated_defocus |
Machine estimated defocus, min and max values in µm |
| calibrated_magnification |
Calculated magnification, no unit |
| cell_cycle |
What was the targeted cell cycle state, if any |
| cellular_features |
What type of cellular features are present in your tomograms? |
| chromatic_aberration_corrector |
Specialist device to correct for chromatic aberration of the microscope lense... |
| collection_angle |
Collection angle set, min and max values in mrad |
| collection_date |
When the sample was collected |
| country |
Country of the institution |
| cryogen |
Cryogen used in cooling the instrument and sample, usually nitrogen |
| cryogen_sample_env |
the cryogen used to freeze the sample, i |
| cs |
Spherical aberration of the instrument, in mm |
| date_time |
Time and date of the data acquisition |
| description |
The description of the item |
| descriptor_name |
Name defining the descriptor |
| descriptor_thing |
Description of the descriptor |
| descriptors |
List of custom descriptors for user-defined key-value pairs describing how mo... |
| details |
Any further comments on the freezing process go here |
| details_tomo |
If you have any further comments on your tomograms please leave them here |
| detectors |
|
| dispersion |
Dispersion of an analytical detector, in eV |
| dose_per_movie |
Average dose per image/movie/tilt - given in electrons per square Angstrom |
| electron_source |
Type of electron source used in the microscope, such as FEG |
| email |
email |
| end_date |
end date |
| energy_filter |
Whether an energy filter was used and its specifics |
| exposure_time |
Time of data acquisition per movie/tilt - in s |
| family_name |
last name |
| frames_per_movie |
Number of frames that on average constitute a full movie, can be a bit hard t... |
| freezing |
|
| funder |
funding organization/person |
| funder_name |
funding organization/person |
| gainref_flip_rotate |
Whether and how you have to flip or rotate the gainref in order to align with... |
| given_name |
first name |
| grant_name |
name of the grant |
| grants |
List of grants associated with the project |
| grids_imaged |
Number of grids imaged for this project - here with qualifier during this dat... |
| growth_condition |
how the specimen was grown |
| growth_location |
In/on what kind of surface/container the cells were grown; i |
| handling |
What was done to the sample, please give an overview of relevant treatments |
| height |
The height of a given item - unit depends on item |
| holder |
Speciman holder model |
| holder_cryogen |
Type of cryogen used in the holder - if the holder is cooled seperately |
| humidity_env |
humidity of the atmosphere right before/ during freezing; in % |
| illumination |
Mode of illumination used during data collection |
| image_size |
The size of the image in pixels, height and width given |
| images_generated |
Number of images generated total for this data collection - might need a qual... |
| imageshift |
Movement of the Beam below the image in order to shift the image on the detec... |
| imaging |
Mode of imaging used during data collection |
| increment |
Increment between elements of a series |
| instrument |
|
| instrument_thin |
Instrument used for thinning the sample |
| instrument_type |
Details of a given specialist instrument |
| ion_source |
what ion source was used? |
| job_title |
job title |
| lift_out |
whether a lift out was performed |
| location |
the geographical location of your source, optimally in a geographic coordinat... |
| main_target |
What was the main biological target of your research for this tomogram? |
| manufacturer |
The name of the manufacturer |
| maximal |
Maximal value of a given dataset property |
| media |
What growth media was used |
| method |
freezing method - such as plunge freezing, high pressure freezing etc |
| method_thin |
The thinning method used, such as FIB milling |
| microscope |
Microscope information |
| microscope_software |
Software used for instrument control, |
| minimal |
Minimal value of a given dataset property |
| mode |
Mode of the detector, e |
| model |
The model of the item |
| name |
The name of the item |
| name_org |
Name of the organization |
| nominal_defocus |
Target defocus set, min and max values in nm |
| nominal_magnification |
Magnification level as indicated by the instrument, no unit |
| operating_mode |
Operating mode of the microscope, i |
| orcid |
ORCID of the author, a type of unique identifier |
| organelles |
What organelles; if any; are present? |
| organism |
the organism(s) present in your sample, if not perfectly defined try to asses... |
| organizational |
|
| person |
person |
| phaseplate |
Phaseplate is a special optics device that can be used to enhance contrast |
| pixel_size |
Pixel size, in Angstrom |
| project_id |
project id |
| role |
Role of the author, for example principal investigator |
| sample |
|
| screen_current |
The total electron beam current hitting the viewing screen, in nA |
| source_env |
where is this sample from? i |
| specialist_optics |
Any type of special optics, such as a phaseplate |
| specimen_env |
|
| spherical_aberration_corrector |
Specialist device to correct for spherical aberration of the microscope lense... |
| start_date |
start date |
| target_thickness |
What was the target thickness of the lamella; in nm |
| technique |
Specifies which Acquisition subschema/class is in use |
| telephone |
work phone |
| temperature_env |
temperature of the sample right before freezing; in K |
| temperature_growth |
temperature of the sample; in K |
| temperature_range |
Temperature during data collection, in K with min and max values |
| thinning |
|
| tilt_angle |
The min, max and increment of the tilt angle in a tomography session |
| tilt_axis_angle |
The tilt axis angle of a tomography series |
| tissue |
if the sample is a tissue sample please indicate what type of tissue |
| tomogram_features |
|
| treatment |
were there any special treatment conditions; such as addition of certain chem... |
| type_org |
Type of organization, academic, commercial, governmental, etc |
| unit |
the unit of a given value |
| unitSI |
the SI unit attached to a si value |
| used |
whether a specific instrument was used during data acquisition |
| value |
the value of a field with a unit |
| valueSI |
value of a given field in respect to its SI unit |
| width |
The width of a given item - unit depends on item |
| width_energy_filter |
Width of the energy filter used |
| x_max |
maximum x |
| x_min |
minimum x |
| y_max |
maximum y |
| y_min |
minimum y |