Class: OverallMolecule

Description of the overall molecule

URI: https://w3id.org/osc-em/oscem-schemas/:OverallMolecule

classDiagram class OverallMolecule click OverallMolecule href "../OverallMolecule" OverallMolecule : assembly OverallMolecule --> "1" AssemblyEnum : assembly click AssemblyEnum href "../AssemblyEnum" OverallMolecule : molecular_type OverallMolecule : molecular_weight OverallMolecule --> "0..1" QuantityValue : molecular_weight click QuantityValue href "../QuantityValue" OverallMolecule : name_sample OverallMolecule : source

Slots

Name	Cardinality and Range	Description	Inheritance
molecular_type	1 String	Description of the overall molecular type, i	direct
name_sample	1 String	Name of the full sample	direct
source	1 String	Where the sample was taken from, i	direct
molecular_weight	0..1 QuantityValue	Molecular weight in Da	direct
assembly	1 AssemblyEnum	What type of higher order structure your sample forms - if any	direct

Usages

used by	used in	type	used
Sample	overall_molecule	range	OverallMolecule

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/osc-em/oscem-schemas

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/osc-em/oscem-schemas/:OverallMolecule
native	https://w3id.org/osc-em/oscem-schemas/:OverallMolecule

LinkML Source

Direct

name: OverallMolecule
description: Description of the overall molecule
from_schema: https://w3id.org/osc-em/oscem-schemas
slots:
- molecular_type
- name_sample
- source
- molecular_weight
- assembly
slot_usage:
  molecular_type:
    name: molecular_type
    required: true
  name_sample:
    name: name_sample
    required: true
  source:
    name: source
    required: true
  molecular_weight:
    name: molecular_weight
  assembly:
    name: assembly
    required: true

Induced

name: OverallMolecule
description: Description of the overall molecule
from_schema: https://w3id.org/osc-em/oscem-schemas
slot_usage:
  molecular_type:
    name: molecular_type
    required: true
  name_sample:
    name: name_sample
    required: true
  source:
    name: source
    required: true
  molecular_weight:
    name: molecular_weight
  assembly:
    name: assembly
    required: true
attributes:
  molecular_type:
    name: molecular_type
    description: Description of the overall molecular type, i.e., a complex
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: molecular_type
    owner: OverallMolecule
    domain_of:
    - OverallMolecule
    - Molecule
    range: string
    required: true
  name_sample:
    name: name_sample
    description: Name of the full sample
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: name_sample
    owner: OverallMolecule
    domain_of:
    - OverallMolecule
    range: string
    required: true
  source:
    name: source
    description: Where the sample was taken from, i.e., natural host, recombinantly
      expressed, etc.
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: source
    owner: OverallMolecule
    domain_of:
    - OverallMolecule
    range: string
    required: true
  molecular_weight:
    name: molecular_weight
    description: Molecular weight in Da
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: molecular_weight
    owner: OverallMolecule
    domain_of:
    - OverallMolecule
    range: QuantityValue
  assembly:
    name: assembly
    description: What type of higher order structure your sample forms - if any.
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: assembly
    owner: OverallMolecule
    domain_of:
    - OverallMolecule
    range: AssemblyEnum
    required: true