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Class: Instrument

Instrument values, mostly constant across a data collection.

URI: https://w3id.org/osc-em/oscem-schemas/:Instrument

classDiagram class Instrument click Instrument href "../Instrument" Instrument : acceleration_voltage Instrument --> "1" QuantityValue : acceleration_voltage click QuantityValue href "../QuantityValue" Instrument : c2_aperture Instrument --> "0..1" QuantityValue : c2_aperture click QuantityValue href "../QuantityValue" Instrument : cs Instrument --> "1" QuantityValue : cs click QuantityValue href "../QuantityValue" Instrument : electron_source Instrument : illumination Instrument : imaging Instrument : microscope

Slots

Name Cardinality and Range Description Inheritance
microscope 1
String		 Name/Type of the Microscope direct
illumination 1
String		 Mode of illumination used during data collection direct
imaging 1
String		 Mode of imaging used during data collection direct
electron_source 1
String		 Type of electron source used in the microscope, such as FEG direct
acceleration_voltage 1
QuantityValue		 Voltage used for the electron acceleration, in kV direct
c2_aperture 0..1
QuantityValue		 C2 aperture size used in data acquisition, in µm direct
cs 1
QuantityValue		 Spherical aberration of the instrument, in mm direct

Usages

used by used in type used
EMDataset instrument range Instrument

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/osc-em/oscem-schemas

Mappings

Mapping Type Mapped Value
self https://w3id.org/osc-em/oscem-schemas/:Instrument
native https://w3id.org/osc-em/oscem-schemas/:Instrument

LinkML Source

Direct

name: Instrument
description: Instrument values, mostly constant across a data collection.
from_schema: https://w3id.org/osc-em/oscem-schemas
slots:
- microscope
- illumination
- imaging
- electron_source
- acceleration_voltage
- c2_aperture
- cs
slot_usage:
  microscope:
    name: microscope
    required: true
  illumination:
    name: illumination
    required: true
  imaging:
    name: imaging
    required: true
  electron_source:
    name: electron_source
    required: true
  acceleration_voltage:
    name: acceleration_voltage
    required: true
  cs:
    name: cs
    required: true

Induced

name: Instrument
description: Instrument values, mostly constant across a data collection.
from_schema: https://w3id.org/osc-em/oscem-schemas
slot_usage:
  microscope:
    name: microscope
    required: true
  illumination:
    name: illumination
    required: true
  imaging:
    name: imaging
    required: true
  electron_source:
    name: electron_source
    required: true
  acceleration_voltage:
    name: acceleration_voltage
    required: true
  cs:
    name: cs
    required: true
attributes:
  microscope:
    name: microscope
    description: Name/Type of the Microscope
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: microscope
    owner: Instrument
    domain_of:
    - Instrument
    range: string
    required: true
  illumination:
    name: illumination
    description: Mode of illumination used during data collection
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: illumination
    owner: Instrument
    domain_of:
    - Instrument
    range: string
    required: true
  imaging:
    name: imaging
    description: Mode of imaging used during data collection
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: imaging
    owner: Instrument
    domain_of:
    - Instrument
    range: string
    required: true
  electron_source:
    name: electron_source
    description: Type of electron source used in the microscope, such as FEG
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: electron_source
    owner: Instrument
    domain_of:
    - Instrument
    range: string
    required: true
  acceleration_voltage:
    name: acceleration_voltage
    description: Voltage used for the electron acceleration, in kV
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: acceleration_voltage
    owner: Instrument
    domain_of:
    - Instrument
    range: QuantityValue
    required: true
  c2_aperture:
    name: c2_aperture
    description: C2 aperture size used in data acquisition, in µm
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: c2_aperture
    owner: Instrument
    domain_of:
    - Instrument
    range: QuantityValue
  cs:
    name: cs
    description: Spherical aberration of the instrument, in mm
    from_schema: https://w3id.org/osc-em/oscem-schemas
    rank: 1000
    alias: cs
    owner: Instrument
    domain_of:
    - Instrument
    range: QuantityValue
    required: true